These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

155 related articles for article (PubMed ID: 34299110)

  • 1. AMIDE v2: High-Throughput Screening Based on AutoDock-GPU and Improved Workflow Leading to Better Performance and Reliability.
    Darme P; Dauchez M; Renard A; Voutquenne-Nazabadioko L; Aubert D; Escotte-Binet S; Renault JH; Villena I; Steffenel LA; Baud S
    Int J Mol Sci; 2021 Jul; 22(14):. PubMed ID: 34299110
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Vina-GPU 2.0: Further Accelerating AutoDock Vina and Its Derivatives with Graphics Processing Units.
    Ding J; Tang S; Mei Z; Wang L; Huang Q; Hu H; Ling M; Wu J
    J Chem Inf Model; 2023 Apr; 63(7):1982-1998. PubMed ID: 36941232
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Accelerating AutoDock Vina with GPUs.
    Tang S; Chen R; Lin M; Lin Q; Zhu Y; Ding J; Hu H; Ling M; Wu J
    Molecules; 2022 May; 27(9):. PubMed ID: 35566391
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GPU-Accelerated Flexible Molecular Docking.
    Fan M; Wang J; Jiang H; Feng Y; Mahdavi M; Madduri K; Kandemir MT; Dokholyan NV
    J Phys Chem B; 2021 Feb; 125(4):1049-1060. PubMed ID: 33497567
    [TBL] [Abstract][Full Text] [Related]  

  • 5. DOVIS: an implementation for high-throughput virtual screening using AutoDock.
    Zhang S; Kumar K; Jiang X; Wallqvist A; Reifman J
    BMC Bioinformatics; 2008 Feb; 9():126. PubMed ID: 18304355
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Message passing interface and multithreading hybrid for parallel molecular docking of large databases on petascale high performance computing machines.
    Zhang X; Wong SE; Lightstone FC
    J Comput Chem; 2013 Apr; 34(11):915-27. PubMed ID: 23345155
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Toward fully automated high performance computing drug discovery: a massively parallel virtual screening pipeline for docking and molecular mechanics/generalized Born surface area rescoring to improve enrichment.
    Zhang X; Wong SE; Lightstone FC
    J Chem Inf Model; 2014 Jan; 54(1):324-37. PubMed ID: 24358939
    [TBL] [Abstract][Full Text] [Related]  

  • 8. pso@autodock: a fast flexible molecular docking program based on Swarm intelligence.
    Namasivayam V; Günther R
    Chem Biol Drug Des; 2007 Dec; 70(6):475-84. PubMed ID: 17986206
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Vina-GPU 2.1: Towards Further Optimizing Docking Speed and Precision of AutoDock Vina and Its Derivatives.
    Tang S; Ding J; Zhu X; Wang Z; Zhao H; Wu J
    IEEE/ACM Trans Comput Biol Bioinform; 2024 Sep; PP():. PubMed ID: 39320991
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Uni-Dock: GPU-Accelerated Docking Enables Ultralarge Virtual Screening.
    Yu Y; Cai C; Wang J; Bo Z; Zhu Z; Zheng H
    J Chem Theory Comput; 2023 Jun; 19(11):3336-3345. PubMed ID: 37125970
    [TBL] [Abstract][Full Text] [Related]  

  • 11. DockoMatic 2.0: high throughput inverse virtual screening and homology modeling.
    Bullock C; Cornia N; Jacob R; Remm A; Peavey T; Weekes K; Mallory C; Oxford JT; McDougal OM; Andersen TL
    J Chem Inf Model; 2013 Aug; 53(8):2161-70. PubMed ID: 23808933
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Fast docking on graphics processing units via Ray-Casting.
    Khar KR; Goldschmidt L; Karanicolas J
    PLoS One; 2013; 8(8):e70661. PubMed ID: 23976948
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Managing Complex Workflows in Bioinformatics: An Interactive Toolkit With GPU Acceleration.
    Welivita A; Perera I; Meedeniya D; Wickramarachchi A; Mallawaarachchi V
    IEEE Trans Nanobioscience; 2018 Jul; 17(3):199-208. PubMed ID: 29994533
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Quantum.Ligand.Dock: protein-ligand docking with quantum entanglement refinement on a GPU system.
    Kantardjiev AA
    Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W415-22. PubMed ID: 22669908
    [TBL] [Abstract][Full Text] [Related]  

  • 15. POAP: A GNU parallel based multithreaded pipeline of open babel and AutoDock suite for boosted high throughput virtual screening.
    Samdani A; Vetrivel U
    Comput Biol Chem; 2018 Jun; 74():39-48. PubMed ID: 29533817
    [TBL] [Abstract][Full Text] [Related]  

  • 16. 1001 Ways to run AutoDock Vina for virtual screening.
    Jaghoori MM; Bleijlevens B; Olabarriaga SD
    J Comput Aided Mol Des; 2016 Mar; 30(3):237-49. PubMed ID: 26897747
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A Kepler Workflow Tool for Reproducible AMBER GPU Molecular Dynamics.
    Purawat S; Ieong PU; Malmstrom RD; Chan GJ; Yeung AK; Walker RC; Altintas I; Amaro RE
    Biophys J; 2017 Jun; 112(12):2469-2474. PubMed ID: 28636905
    [TBL] [Abstract][Full Text] [Related]  

  • 18. InstaDock: A single-click graphical user interface for molecular docking-based virtual high-throughput screening.
    Mohammad T; Mathur Y; Hassan MI
    Brief Bioinform; 2021 Jul; 22(4):. PubMed ID: 33105480
    [TBL] [Abstract][Full Text] [Related]  

  • 19. FWAVina: A novel optimization algorithm for protein-ligand docking based on the fireworks algorithm.
    Li J; Song Y; Li F; Zhang H; Liu W
    Comput Biol Chem; 2020 Oct; 88():107363. PubMed ID: 32861160
    [TBL] [Abstract][Full Text] [Related]  

  • 20. LASSIE: simulating large-scale models of biochemical systems on GPUs.
    Tangherloni A; Nobile MS; Besozzi D; Mauri G; Cazzaniga P
    BMC Bioinformatics; 2017 May; 18(1):246. PubMed ID: 28486952
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.