264 related articles for article (PubMed ID: 34301928)
41. Expanded catalog of microbial genes and metagenome-assembled genomes from the pig gut microbiome.
Chen C; Zhou Y; Fu H; Xiong X; Fang S; Jiang H; Wu J; Yang H; Gao J; Huang L
Nat Commun; 2021 Feb; 12(1):1106. PubMed ID: 33597514
[TBL] [Abstract][Full Text] [Related]
42. Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery.
Stewart RD; Auffret MD; Warr A; Walker AW; Roehe R; Watson M
Nat Biotechnol; 2019 Aug; 37(8):953-961. PubMed ID: 31375809
[TBL] [Abstract][Full Text] [Related]
43. Applying Genome-Resolved Metagenomics to Deconvolute the Halophilic Microbiome.
Uritskiy G; DiRuggiero J
Genes (Basel); 2019 Mar; 10(3):. PubMed ID: 30875864
[TBL] [Abstract][Full Text] [Related]
44. What Is Metagenomics Teaching Us, and What Is Missed?
New FN; Brito IL
Annu Rev Microbiol; 2020 Sep; 74():117-135. PubMed ID: 32603623
[TBL] [Abstract][Full Text] [Related]
45. Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3.
Beghini F; McIver LJ; Blanco-Míguez A; Dubois L; Asnicar F; Maharjan S; Mailyan A; Manghi P; Scholz M; Thomas AM; Valles-Colomer M; Weingart G; Zhang Y; Zolfo M; Huttenhower C; Franzosa EA; Segata N
Elife; 2021 May; 10():. PubMed ID: 33944776
[TBL] [Abstract][Full Text] [Related]
46. Human reference gut microbiome catalog including newly assembled genomes from under-represented Asian metagenomes.
Kim CY; Lee M; Yang S; Kim K; Yong D; Kim HR; Lee I
Genome Med; 2021 Aug; 13(1):134. PubMed ID: 34446072
[TBL] [Abstract][Full Text] [Related]
47. Ray Meta: scalable de novo metagenome assembly and profiling.
Boisvert S; Raymond F; Godzaridis E; Laviolette F; Corbeil J
Genome Biol; 2012 Dec; 13(12):R122. PubMed ID: 23259615
[TBL] [Abstract][Full Text] [Related]
48. Generation of a Metagenomics Proximity Ligation 3C Library of a Mammalian Gut Microbiota.
Foutel-Rodier T; Thierry A; Koszul R; Marbouty M
Methods Enzymol; 2018; 612():183-195. PubMed ID: 30502941
[TBL] [Abstract][Full Text] [Related]
49. Estimating DNA coverage and abundance in metagenomes using a gamma approximation.
Hooper SD; Dalevi D; Pati A; Mavromatis K; Ivanova NN; Kyrpides NC
Bioinformatics; 2010 Feb; 26(3):295-301. PubMed ID: 20008478
[TBL] [Abstract][Full Text] [Related]
50. Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing.
Singleton CM; Petriglieri F; Kristensen JM; Kirkegaard RH; Michaelsen TY; Andersen MH; Kondrotaite Z; Karst SM; Dueholm MS; Nielsen PH; Albertsen M
Nat Commun; 2021 Mar; 12(1):2009. PubMed ID: 33790294
[TBL] [Abstract][Full Text] [Related]
51. Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes.
White RA; Bottos EM; Roy Chowdhury T; Zucker JD; Brislawn CJ; Nicora CD; Fansler SJ; Glaesemann KR; Glass K; Jansson JK
mSystems; 2016; 1(3):. PubMed ID: 27822530
[TBL] [Abstract][Full Text] [Related]
52. Assessment of urban microbiome assemblies with the help of targeted in silico gold standards.
Gerner SM; Rattei T; Graf AB
Biol Direct; 2018 Oct; 13(1):22. PubMed ID: 30621760
[TBL] [Abstract][Full Text] [Related]
53. Recovery and Analysis of Long-Read Metagenome-Assembled Genomes.
Arumugam K; Bessarab I; Haryono MAS; Williams RBH
Methods Mol Biol; 2023; 2649():235-259. PubMed ID: 37258866
[TBL] [Abstract][Full Text] [Related]
54. MetaPlatanus: a metagenome assembler that combines long-range sequence links and species-specific features.
Kajitani R; Noguchi H; Gotoh Y; Ogura Y; Yoshimura D; Okuno M; Toyoda A; Kuwahara T; Hayashi T; Itoh T
Nucleic Acids Res; 2021 Dec; 49(22):e130. PubMed ID: 34570223
[TBL] [Abstract][Full Text] [Related]
55. Long-Read Metagenomics Improves the Recovery of Viral Diversity from Complex Natural Marine Samples.
Zaragoza-Solas A; Haro-Moreno JM; Rodriguez-Valera F; López-Pérez M
mSystems; 2022 Jun; 7(3):e0019222. PubMed ID: 35695508
[TBL] [Abstract][Full Text] [Related]
56. Metagenome assembly through clustering of next-generation sequencing data using protein sequences.
Sim M; Kim J
J Microbiol Methods; 2015 Feb; 109():180-7. PubMed ID: 25572018
[TBL] [Abstract][Full Text] [Related]
57. Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation.
Beaulaurier J; Zhu S; Deikus G; Mogno I; Zhang XS; Davis-Richardson A; Canepa R; Triplett EW; Faith JJ; Sebra R; Schadt EE; Fang G
Nat Biotechnol; 2018 Jan; 36(1):61-69. PubMed ID: 29227468
[TBL] [Abstract][Full Text] [Related]
58. ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies.
Clark SC; Egan R; Frazier PI; Wang Z
Bioinformatics; 2013 Feb; 29(4):435-43. PubMed ID: 23303509
[TBL] [Abstract][Full Text] [Related]
59. Long-Read Metagenome-Assembled Genomes Improve Identification of Novel Complete Biosynthetic Gene Clusters in a Complex Microbial Activated Sludge Ecosystem.
Sánchez-Navarro R; Nuhamunada M; Mohite OS; Wasmund K; Albertsen M; Gram L; Nielsen PH; Weber T; Singleton CM
mSystems; 2022 Dec; 7(6):e0063222. PubMed ID: 36445112
[TBL] [Abstract][Full Text] [Related]
60. Computational methods for chromosome-scale haplotype reconstruction.
Garg S
Genome Biol; 2021 Apr; 22(1):101. PubMed ID: 33845884
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
