These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

192 related articles for article (PubMed ID: 34302676)

  • 1. In Silico Prediction of the Binding, Folding, Insertion, and Overall Stability of Membrane-Active Peptides.
    Frazee N; Burns V; Gupta C; Mertz B
    Methods Mol Biol; 2021; 2315():161-182. PubMed ID: 34302676
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Molecular Dynamics Simulations Are Redefining Our View of Peptides Interacting with Biological Membranes.
    Ulmschneider JP; Ulmschneider MB
    Acc Chem Res; 2018 May; 51(5):1106-1116. PubMed ID: 29667836
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Understanding and modelling the interactions of peptides with membranes: from partitioning to self-assembly.
    Chen CH; Melo MC; Berglund N; Khan A; de la Fuente-Nunez C; Ulmschneider JP; Ulmschneider MB
    Curr Opin Struct Biol; 2020 Apr; 61():160-166. PubMed ID: 32006812
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Determining peptide partitioning properties via computer simulation.
    Ulmschneider JP; Andersson M; Ulmschneider MB
    J Membr Biol; 2011 Jan; 239(1-2):15-26. PubMed ID: 21107546
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Efficient molecular mechanics simulations of the folding, orientation, and assembly of peptides in lipid bilayers using an implicit atomic solvation model.
    Bordner AJ; Zorman B; Abagyan R
    J Comput Aided Mol Des; 2011 Oct; 25(10):895-911. PubMed ID: 21904908
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Exploring peptide-membrane interactions with coarse-grained MD simulations.
    Hall BA; Chetwynd AP; Sansom MS
    Biophys J; 2011 Apr; 100(8):1940-8. PubMed ID: 21504730
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Peptide partitioning properties from direct insertion studies.
    Ulmschneider MB; Smith JC; Ulmschneider JP
    Biophys J; 2010 Jun; 98(12):L60-2. PubMed ID: 20550886
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The importance of membrane defects-lessons from simulations.
    Bennett WF; Tieleman DP
    Acc Chem Res; 2014 Aug; 47(8):2244-51. PubMed ID: 24892900
    [TBL] [Abstract][Full Text] [Related]  

  • 9. In silico partitioning and transmembrane insertion of hydrophobic peptides under equilibrium conditions.
    Ulmschneider JP; Smith JC; White SH; Ulmschneider MB
    J Am Chem Soc; 2011 Oct; 133(39):15487-95. PubMed ID: 21861483
    [TBL] [Abstract][Full Text] [Related]  

  • 10. In silico pharmacology: Drug membrane partitioning and crossing.
    Di Meo F; Fabre G; Berka K; Ossman T; Chantemargue B; Paloncýová M; Marquet P; Otyepka M; Trouillas P
    Pharmacol Res; 2016 Sep; 111():471-486. PubMed ID: 27378566
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Predicting Membrane-Active Peptide Dynamics in Fluidic Lipid Membranes.
    Chen CH; Pepper K; Ulmschneider JP; Ulmschneider MB; Lu TK
    Methods Mol Biol; 2022; 2405():115-136. PubMed ID: 35298811
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Coupling molecular dynamics simulations with experiments for the rational design of indolicidin-analogous antimicrobial peptides.
    Tsai CW; Hsu NY; Wang CH; Lu CY; Chang Y; Tsai HH; Ruaan RC
    J Mol Biol; 2009 Sep; 392(3):837-54. PubMed ID: 19576903
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Binding, folding and insertion of a β-hairpin peptide at a lipid bilayer surface: Influence of electrostatics and lipid tail packing.
    Reid KA; Davis CM; Dyer RB; Kindt JT
    Biochim Biophys Acta Biomembr; 2018 Mar; 1860(3):792-800. PubMed ID: 29291379
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Folding and insertion thermodynamics of the transmembrane WALP peptide.
    Bereau T; Bennett WF; Pfaendtner J; Deserno M; Karttunen M
    J Chem Phys; 2015 Dec; 143(24):243127. PubMed ID: 26723612
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Folding is not required for bilayer insertion: replica exchange simulations of an alpha-helical peptide with an explicit lipid bilayer.
    Nymeyer H; Woolf TB; Garcia AE
    Proteins; 2005 Jun; 59(4):783-90. PubMed ID: 15828005
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Molecular dynamics simulations of lipid bilayers: simple recipe of how to do it.
    Martinez-Seara H; Róg T
    Methods Mol Biol; 2013; 924():407-29. PubMed ID: 23034757
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Molecular Dynamics Simulation and Analysis of the Antimicrobial Peptide-Lipid Bilayer Interactions.
    Arasteh S; Bagheri M
    Methods Mol Biol; 2017; 1548():103-118. PubMed ID: 28013500
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).
    Foffi G; Pastore A; Piazza F; Temussi PA
    Phys Biol; 2013 Aug; 10(4):040301. PubMed ID: 23912807
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Interaction of monotopic membrane enzymes with a lipid bilayer: a coarse-grained MD simulation study.
    Balali-Mood K; Bond PJ; Sansom MS
    Biochemistry; 2009 Mar; 48(10):2135-45. PubMed ID: 19161285
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Absorption and folding of melittin onto lipid bilayer membranes via unbiased atomic detail microsecond molecular dynamics simulation.
    Chen CH; Wiedman G; Khan A; Ulmschneider MB
    Biochim Biophys Acta; 2014 Sep; 1838(9):2243-9. PubMed ID: 24769159
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.