These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

182 related articles for article (PubMed ID: 34311744)

  • 1. DeTOKI identifies and characterizes the dynamics of chromatin TAD-like domains in a single cell.
    Li X; Zeng G; Li A; Zhang Z
    Genome Biol; 2021 Jul; 22(1):217. PubMed ID: 34311744
    [TBL] [Abstract][Full Text] [Related]  

  • 2. DeDoc2 Identifies and Characterizes the Hierarchy and Dynamics of Chromatin TAD-Like Domains in the Single Cells.
    Li A; Zeng G; Wang H; Li X; Zhang Z
    Adv Sci (Weinh); 2023 Jul; 10(20):e2300366. PubMed ID: 37162225
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Transcription-coupled structural dynamics of topologically associating domains regulate replication origin efficiency.
    Li Y; Xue B; Zhang M; Zhang L; Hou Y; Qin Y; Long H; Su QP; Wang Y; Guan X; Jin Y; Cao Y; Li G; Sun Y
    Genome Biol; 2021 Jul; 22(1):206. PubMed ID: 34253239
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Sub-kb Hi-C in D. melanogaster reveals conserved characteristics of TADs between insect and mammalian cells.
    Wang Q; Sun Q; Czajkowsky DM; Shao Z
    Nat Commun; 2018 Jan; 9(1):188. PubMed ID: 29335463
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Computational prediction of CTCF/cohesin-based intra-TAD loops that insulate chromatin contacts and gene expression in mouse liver.
    Matthews BJ; Waxman DJ
    Elife; 2018 May; 7():. PubMed ID: 29757144
    [TBL] [Abstract][Full Text] [Related]  

  • 6. High-resolution TADs reveal DNA sequences underlying genome organization in flies.
    Ramírez F; Bhardwaj V; Arrigoni L; Lam KC; Grüning BA; Villaveces J; Habermann B; Akhtar A; Manke T
    Nat Commun; 2018 Jan; 9(1):189. PubMed ID: 29335486
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Enhancer accessibility and CTCF occupancy underlie asymmetric TAD architecture and cell type specific genome topology.
    Barrington C; Georgopoulou D; Pezic D; Varsally W; Herrero J; Hadjur S
    Nat Commun; 2019 Jul; 10(1):2908. PubMed ID: 31266948
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Functional dissection of the Sox9-Kcnj2 locus identifies nonessential and instructive roles of TAD architecture.
    Despang A; Schöpflin R; Franke M; Ali S; Jerković I; Paliou C; Chan WL; Timmermann B; Wittler L; Vingron M; Mundlos S; Ibrahim DM
    Nat Genet; 2019 Aug; 51(8):1263-1271. PubMed ID: 31358994
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Identifying TAD-like domains on single-cell Hi-C data by graph embedding and changepoint detection.
    Liu E; Lyu H; Liu Y; Fu L; Cheng X; Yin X
    Bioinformatics; 2024 Mar; 40(3):. PubMed ID: 38449288
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes.
    Luzhin AV; Flyamer IM; Khrameeva EE; Ulianov SV; Razin SV; Gavrilov AA
    J Cell Biochem; 2019 Mar; 120(3):4494-4503. PubMed ID: 30260021
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Making sense of the linear genome, gene function and TADs.
    Long HS; Greenaway S; Powell G; Mallon AM; Lindgren CM; Simon MM
    Epigenetics Chromatin; 2022 Jan; 15(1):4. PubMed ID: 35090532
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells.
    Bintu B; Mateo LJ; Su JH; Sinnott-Armstrong NA; Parker M; Kinrot S; Yamaya K; Boettiger AN; Zhuang X
    Science; 2018 Oct; 362(6413):. PubMed ID: 30361340
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Chromatin architecture reorganization during neuronal cell differentiation in
    Chathoth KT; Zabet NR
    Genome Res; 2019 Apr; 29(4):613-625. PubMed ID: 30709849
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Induction of a chromatin boundary in vivo upon insertion of a TAD border.
    Willemin A; Lopez-Delisle L; Bolt CC; Gadolini ML; Duboule D; Rodriguez-Carballo E
    PLoS Genet; 2021 Jul; 17(7):e1009691. PubMed ID: 34292939
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Evolutionarily Conserved Principles Predict 3D Chromatin Organization.
    Rowley MJ; Nichols MH; Lyu X; Ando-Kuri M; Rivera ISM; Hermetz K; Wang P; Ruan Y; Corces VG
    Mol Cell; 2017 Sep; 67(5):837-852.e7. PubMed ID: 28826674
    [TBL] [Abstract][Full Text] [Related]  

  • 16. scHiCEmbed: Bin-Specific Embeddings of Single-Cell Hi-C Data Using Graph Auto-Encoders.
    Liu T; Wang Z
    Genes (Basel); 2022 Jun; 13(6):. PubMed ID: 35741810
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program.
    Dileep V; Ay F; Sima J; Vera DL; Noble WS; Gilbert DM
    Genome Res; 2015 Aug; 25(8):1104-13. PubMed ID: 25995270
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding.
    Hsieh TS; Cattoglio C; Slobodyanyuk E; Hansen AS; Rando OJ; Tjian R; Darzacq X
    Mol Cell; 2020 May; 78(3):539-553.e8. PubMed ID: 32213323
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Key role for CTCF in establishing chromatin structure in human embryos.
    Chen X; Ke Y; Wu K; Zhao H; Sun Y; Gao L; Liu Z; Zhang J; Tao W; Hou Z; Liu H; Liu J; Chen ZJ
    Nature; 2019 Dec; 576(7786):306-310. PubMed ID: 31801998
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ClusterTAD: an unsupervised machine learning approach to detecting topologically associated domains of chromosomes from Hi-C data.
    Oluwadare O; Cheng J
    BMC Bioinformatics; 2017 Nov; 18(1):480. PubMed ID: 29137603
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.