247 related articles for article (PubMed ID: 34314098)
1. Transcription factors: Bridge between cell signaling and gene regulation.
Weidemüller P; Kholmatov M; Petsalaki E; Zaugg JB
Proteomics; 2021 Dec; 21(23-24):e2000034. PubMed ID: 34314098
[TBL] [Abstract][Full Text] [Related]
2. TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information.
Liu Q; Tan Y; Huang T; Ding G; Tu Z; Liu L; Li Y; Dai H; Xie L
BMC Bioinformatics; 2010 Dec; 11 Suppl 11(Suppl 11):S5. PubMed ID: 21172055
[TBL] [Abstract][Full Text] [Related]
3. Inter- and intra-combinatorial regulation by transcription factors and microRNAs.
Zhou Y; Ferguson J; Chang JT; Kluger Y
BMC Genomics; 2007 Oct; 8():396. PubMed ID: 17971223
[TBL] [Abstract][Full Text] [Related]
4. Canonical and single-cell Hi-C reveal distinct chromatin interaction sub-networks of mammalian transcription factors.
Ma X; Ezer D; Adryan B; Stevens TJ
Genome Biol; 2018 Oct; 19(1):174. PubMed ID: 30359306
[TBL] [Abstract][Full Text] [Related]
5. Systematic target function annotation of human transcription factors.
Li YF; Altman RB
BMC Biol; 2018 Jan; 16(1):4. PubMed ID: 29325558
[TBL] [Abstract][Full Text] [Related]
6. Analysis of Enhancers and Transcriptional Networks in Thermogenic Adipocytes.
Loft A; Andersen MW; Madsen JGS; Mandrup S
Methods Mol Biol; 2022; 2448():155-175. PubMed ID: 35167097
[TBL] [Abstract][Full Text] [Related]
7. Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.
Zhang Y; Xuan J; de los Reyes BG; Clarke R; Ressom HW
BMC Bioinformatics; 2008 Apr; 9():203. PubMed ID: 18426580
[TBL] [Abstract][Full Text] [Related]
8. Trimming of mammalian transcriptional networks using network component analysis.
Tran LM; Hyduke DR; Liao JC
BMC Bioinformatics; 2010 Oct; 11():511. PubMed ID: 20942926
[TBL] [Abstract][Full Text] [Related]
9. The transcription factor reservoir and chromatin landscape in activated plasmacytoid dendritic cells.
Mann-Nüttel R; Ali S; Petzsch P; Köhrer K; Alferink J; Scheu S
BMC Genom Data; 2021 Sep; 22(1):37. PubMed ID: 34544361
[TBL] [Abstract][Full Text] [Related]
10. hTFtarget: A Comprehensive Database for Regulations of Human Transcription Factors and Their Targets.
Zhang Q; Liu W; Zhang HM; Xie GY; Miao YR; Xia M; Guo AY
Genomics Proteomics Bioinformatics; 2020 Apr; 18(2):120-128. PubMed ID: 32858223
[TBL] [Abstract][Full Text] [Related]
11. Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF.
Berest I; Arnold C; Reyes-Palomares A; Palla G; Rasmussen KD; Giles H; Bruch PM; Huber W; Dietrich S; Helin K; Zaugg JB
Cell Rep; 2019 Dec; 29(10):3147-3159.e12. PubMed ID: 31801079
[TBL] [Abstract][Full Text] [Related]
12. Feedback enrichment analysis for transcription factor-target genes in signaling pathways.
Inoue K
Biosystems; 2020 Dec; 198():104262. PubMed ID: 33002527
[TBL] [Abstract][Full Text] [Related]
13. Improved recovery of cell-cycle gene expression in Saccharomyces cerevisiae from regulatory interactions in multiple omics data.
Panchy NL; Lloyd JP; Shiu SH
BMC Genomics; 2020 Feb; 21(1):159. PubMed ID: 32054475
[TBL] [Abstract][Full Text] [Related]
14. Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants.
Varala K; Marshall-Colón A; Cirrone J; Brooks MD; Pasquino AV; Léran S; Mittal S; Rock TM; Edwards MB; Kim GJ; Ruffel S; McCombie WR; Shasha D; Coruzzi GM
Proc Natl Acad Sci U S A; 2018 Jun; 115(25):6494-6499. PubMed ID: 29769331
[TBL] [Abstract][Full Text] [Related]
15. Atlas of regulated target genes of transcription factors (ART-TF) in human ES cells.
Sharov AA; Nakatake Y; Wang W
BMC Bioinformatics; 2022 Sep; 23(1):377. PubMed ID: 36114445
[TBL] [Abstract][Full Text] [Related]
16. Transcriptional regulation prediction of antiestrogen resistance in breast cancer based on RNA polymerase II binding data.
Zhang D; Wang G; Wang Y
BMC Bioinformatics; 2014; 15 Suppl 2(Suppl 2):S10. PubMed ID: 24564526
[TBL] [Abstract][Full Text] [Related]
17. Past Roadblocks and New Opportunities in Transcription Factor Network Mapping.
Brent MR
Trends Genet; 2016 Nov; 32(11):736-750. PubMed ID: 27720190
[TBL] [Abstract][Full Text] [Related]
18. Chromatin properties of regulatory DNA probed by manipulation of transcription factors.
Sharov AA; Nishiyama A; Qian Y; Dudekula DB; Longo DL; Schlessinger D; Ko MS
J Comput Biol; 2014 Aug; 21(8):569-77. PubMed ID: 24918633
[TBL] [Abstract][Full Text] [Related]
19. A comprehensive survey for human transcription factors on expression, regulation, interaction, phenotype and cancer survival.
Hu H; Zhang Q; Hu FF; Liu CJ; Guo AY
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33517372
[TBL] [Abstract][Full Text] [Related]
20. Unraveling transcriptional regulatory programs by integrative analysis of microarray and transcription factor binding data.
Li H; Zhan M
Bioinformatics; 2008 Sep; 24(17):1874-80. PubMed ID: 18586698
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
