149 related articles for article (PubMed ID: 34320923)
1. MUREN: a robust and multi-reference approach of RNA-seq transcript normalization.
Feng Y; Li LM
BMC Bioinformatics; 2021 Jul; 22(1):386. PubMed ID: 34320923
[TBL] [Abstract][Full Text] [Related]
2. A scaling-free minimum enclosing ball method to detect differentially expressed genes for RNA-seq data.
Zhou Y; Yang B; Wang J; Zhu J; Tian G
BMC Genomics; 2021 Jun; 22(1):479. PubMed ID: 34174824
[TBL] [Abstract][Full Text] [Related]
3. Gene Ontology based housekeeping gene selection for RNA-seq normalization.
Chen CM; Lu YL; Sio CP; Wu GC; Tzou WS; Pai TW
Methods; 2014 Jun; 67(3):354-63. PubMed ID: 24561167
[TBL] [Abstract][Full Text] [Related]
4. scKWARN: Kernel-weighted-average robust normalization for single-cell RNA-seq data.
Hsu CY; Chang CJ; Liu Q; Shyr Y
Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38237908
[TBL] [Abstract][Full Text] [Related]
5. Robust normalization and transformation techniques for constructing gene coexpression networks from RNA-seq data.
Johnson KA; Krishnan A
Genome Biol; 2022 Jan; 23(1):1. PubMed ID: 34980209
[TBL] [Abstract][Full Text] [Related]
6. A Zipf-plot based normalization method for high-throughput RNA-seq data.
Wang B
PLoS One; 2020; 15(4):e0230594. PubMed ID: 32271772
[TBL] [Abstract][Full Text] [Related]
7. RNA-Seq is not required to determine stable reference genes for qPCR normalization.
Sampathkumar NK; Sundaram VK; Danthi PS; Barakat R; Solomon S; Mondal M; Carre I; El Jalkh T; Padilla-Ferrer A; Grenier J; Massaad C; Mitchell JC
PLoS Comput Biol; 2022 Feb; 18(2):e1009868. PubMed ID: 35226660
[TBL] [Abstract][Full Text] [Related]
8. SMIXnorm: Fast and Accurate RNA-Seq Data Normalization for Formalin-Fixed Paraffin-Embedded Samples.
Yin S; Zhan X; Yao B; Xiao G; Wang X; Xie Y
Front Genet; 2021; 12():650795. PubMed ID: 33841507
[TBL] [Abstract][Full Text] [Related]
9. Using RNentropy to Detect Significant Variation in Gene Expression Across Multiple RNA-Seq or Single-Cell RNA-Seq Samples.
Zambelli F; Pavesi G
Methods Mol Biol; 2021; 2284():77-96. PubMed ID: 33835439
[TBL] [Abstract][Full Text] [Related]
10. Normalization of Single-Cell RNA-Seq Data.
Risso D
Methods Mol Biol; 2021; 2284():303-329. PubMed ID: 33835450
[TBL] [Abstract][Full Text] [Related]
11. A statistical normalization method and differential expression analysis for RNA-seq data between different species.
Zhou Y; Zhu J; Tong T; Wang J; Lin B; Zhang J
BMC Bioinformatics; 2019 Mar; 20(1):163. PubMed ID: 30925894
[TBL] [Abstract][Full Text] [Related]
12. bayNorm: Bayesian gene expression recovery, imputation and normalization for single-cell RNA-sequencing data.
Tang W; Bertaux F; Thomas P; Stefanelli C; Saint M; Marguerat S; Shahrezaei V
Bioinformatics; 2020 Feb; 36(4):1174-1181. PubMed ID: 31584606
[TBL] [Abstract][Full Text] [Related]
13. TCC: an R package for comparing tag count data with robust normalization strategies.
Sun J; Nishiyama T; Shimizu K; Kadota K
BMC Bioinformatics; 2013 Jul; 14():219. PubMed ID: 23837715
[TBL] [Abstract][Full Text] [Related]
14. Normalization of RNA-Seq data using adaptive trimmed mean with multi-reference.
Singh V; Kirtipal N; Song B; Lee S
Brief Bioinform; 2024 Mar; 25(3):. PubMed ID: 38770720
[TBL] [Abstract][Full Text] [Related]
15. Normalization of RNA-seq data using factor analysis of control genes or samples.
Risso D; Ngai J; Speed TP; Dudoit S
Nat Biotechnol; 2014 Sep; 32(9):896-902. PubMed ID: 25150836
[TBL] [Abstract][Full Text] [Related]
16. Systematic comparison of RNA-Seq normalization methods using measurement error models.
Sun Z; Zhu Y
Bioinformatics; 2012 Oct; 28(20):2584-91. PubMed ID: 22914217
[TBL] [Abstract][Full Text] [Related]
17. Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster.
Lin Y; Golovnina K; Chen ZX; Lee HN; Negron YL; Sultana H; Oliver B; Harbison ST
BMC Genomics; 2016 Jan; 17():28. PubMed ID: 26732976
[TBL] [Abstract][Full Text] [Related]
18. PRECISION.seq: An R Package for Benchmarking Depth Normalization in microRNA Sequencing.
Zou J; Düren Y; Qin LX
Front Genet; 2021; 12():823431. PubMed ID: 35154266
[TBL] [Abstract][Full Text] [Related]
19. How does normalization impact RNA-seq disease diagnosis?
Han H; Men K
J Biomed Inform; 2018 Sep; 85():80-92. PubMed ID: 30041017
[TBL] [Abstract][Full Text] [Related]
20. A Unified Model for Joint Normalization and Differential Gene Expression Detection in RNA-Seq Data.
Liu K; Ye J; Yang Y; Shen L; Jiang H
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(2):442-454. PubMed ID: 29993952
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
