These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

178 related articles for article (PubMed ID: 34324224)

  • 1. Protein oligomer modeling guided by predicted interchain contacts in CASP14.
    Baek M; Anishchenko I; Park H; Humphreys IR; Baker D
    Proteins; 2021 Dec; 89(12):1824-1833. PubMed ID: 34324224
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Protein oligomer structure prediction using GALAXY in CASP14.
    Park T; Woo H; Yang J; Kwon S; Won J; Seok C
    Proteins; 2021 Dec; 89(12):1844-1851. PubMed ID: 34363243
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Assessment of the CASP14 assembly predictions.
    Ozden B; Kryshtafovych A; Karaca E
    Proteins; 2021 Dec; 89(12):1787-1799. PubMed ID: 34337786
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Protein structure prediction using deep learning distance and hydrogen-bonding restraints in CASP14.
    Zheng W; Li Y; Zhang C; Zhou X; Pearce R; Bell EW; Huang X; Zhang Y
    Proteins; 2021 Dec; 89(12):1734-1751. PubMed ID: 34331351
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protein inter-residue contact and distance prediction by coupling complementary coevolution features with deep residual networks in CASP14.
    Li Y; Zhang C; Zheng W; Zhou X; Bell EW; Yu DJ; Zhang Y
    Proteins; 2021 Dec; 89(12):1911-1921. PubMed ID: 34382712
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Applying and improving AlphaFold at CASP14.
    Jumper J; Evans R; Pritzel A; Green T; Figurnov M; Ronneberger O; Tunyasuvunakool K; Bates R; Žídek A; Potapenko A; Bridgland A; Meyer C; Kohl SAA; Ballard AJ; Cowie A; Romera-Paredes B; Nikolov S; Jain R; Adler J; Back T; Petersen S; Reiman D; Clancy E; Zielinski M; Steinegger M; Pacholska M; Berghammer T; Silver D; Vinyals O; Senior AW; Kavukcuoglu K; Kohli P; Hassabis D
    Proteins; 2021 Dec; 89(12):1711-1721. PubMed ID: 34599769
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Assessment of domain interactions in the fourteenth round of the Critical Assessment of Structure Prediction (CASP14).
    Schaeffer RD; Kinch L; Kryshtafovych A; Grishin NV
    Proteins; 2021 Dec; 89(12):1700-1710. PubMed ID: 34455641
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Improving protein tertiary structure prediction by deep learning and distance prediction in CASP14.
    Liu J; Wu T; Guo Z; Hou J; Cheng J
    Proteins; 2022 Jan; 90(1):58-72. PubMed ID: 34291486
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MULTICOM2 open-source protein structure prediction system powered by deep learning and distance prediction.
    Wu T; Liu J; Guo Z; Hou J; Cheng J
    Sci Rep; 2021 Jun; 11(1):13155. PubMed ID: 34162922
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Template-based modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30.
    Lee H; Baek M; Lee GR; Park S; Seok C
    Proteins; 2017 Mar; 85(3):399-407. PubMed ID: 27770545
    [TBL] [Abstract][Full Text] [Related]  

  • 11. High-accuracy protein structure prediction in CASP14.
    Pereira J; Simpkin AJ; Hartmann MD; Rigden DJ; Keegan RM; Lupas AN
    Proteins; 2021 Dec; 89(12):1687-1699. PubMed ID: 34218458
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13.
    Hou J; Wu T; Cao R; Cheng J
    Proteins; 2019 Dec; 87(12):1165-1178. PubMed ID: 30985027
    [TBL] [Abstract][Full Text] [Related]  

  • 13. DNCON2_Inter: predicting interchain contacts for homodimeric and homomultimeric protein complexes using multiple sequence alignments of monomers and deep learning.
    Quadir F; Roy RS; Halfmann R; Cheng J
    Sci Rep; 2021 Jun; 11(1):12295. PubMed ID: 34112907
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.
    Lensink MF; Brysbaert G; Nadzirin N; Velankar S; Chaleil RAG; Gerguri T; Bates PA; Laine E; Carbone A; Grudinin S; Kong R; Liu RR; Xu XM; Shi H; Chang S; Eisenstein M; Karczynska A; Czaplewski C; Lubecka E; Lipska A; Krupa P; Mozolewska M; Golon Ł; Samsonov S; Liwo A; Crivelli S; Pagès G; Karasikov M; Kadukova M; Yan Y; Huang SY; Rosell M; Rodríguez-Lumbreras LA; Romero-Durana M; Díaz-Bueno L; Fernandez-Recio J; Christoffer C; Terashi G; Shin WH; Aderinwale T; Maddhuri Venkata Subraman SR; Kihara D; Kozakov D; Vajda S; Porter K; Padhorny D; Desta I; Beglov D; Ignatov M; Kotelnikov S; Moal IH; Ritchie DW; Chauvot de Beauchêne I; Maigret B; Devignes MD; Ruiz Echartea ME; Barradas-Bautista D; Cao Z; Cavallo L; Oliva R; Cao Y; Shen Y; Baek M; Park T; Woo H; Seok C; Braitbard M; Bitton L; Scheidman-Duhovny D; Dapkūnas J; Olechnovič K; Venclovas Č; Kundrotas PJ; Belkin S; Chakravarty D; Badal VD; Vakser IA; Vreven T; Vangaveti S; Borrman T; Weng Z; Guest JD; Gowthaman R; Pierce BG; Xu X; Duan R; Qiu L; Hou J; Ryan Merideth B; Ma Z; Cheng J; Zou X; Koukos PI; Roel-Touris J; Ambrosetti F; Geng C; Schaarschmidt J; Trellet ME; Melquiond ASJ; Xue L; Jiménez-García B; van Noort CW; Honorato RV; Bonvin AMJJ; Wodak SJ
    Proteins; 2019 Dec; 87(12):1200-1221. PubMed ID: 31612567
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Improving fragment-based ab initio protein structure assembly using low-accuracy contact-map predictions.
    Mortuza SM; Zheng W; Zhang C; Li Y; Pearce R; Zhang Y
    Nat Commun; 2021 Aug; 12(1):5011. PubMed ID: 34408149
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model.
    Wang S; Sun S; Li Z; Zhang R; Xu J
    PLoS Comput Biol; 2017 Jan; 13(1):e1005324. PubMed ID: 28056090
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Distance-based reconstruction of protein quaternary structures from inter-chain contacts.
    Soltanikazemi E; Quadir F; Roy RS; Guo Z; Cheng J
    Proteins; 2022 Mar; 90(3):720-731. PubMed ID: 34716620
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Deep-learning contact-map guided protein structure prediction in CASP13.
    Zheng W; Li Y; Zhang C; Pearce R; Mortuza SM; Zhang Y
    Proteins; 2019 Dec; 87(12):1149-1164. PubMed ID: 31365149
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Fast and accurate Ab Initio Protein structure prediction using deep learning potentials.
    Pearce R; Li Y; Omenn GS; Zhang Y
    PLoS Comput Biol; 2022 Sep; 18(9):e1010539. PubMed ID: 36112717
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Modeling of protein complexes in CASP14 with emphasis on the interaction interface prediction.
    Dapkūnas J; Olechnovič K; Venclovas Č
    Proteins; 2021 Dec; 89(12):1834-1843. PubMed ID: 34176161
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.