173 related articles for article (PubMed ID: 34342226)
21. quincunx: an R package to query, download and wrangle PGS Catalog data.
Magno R; Duarte I; Maia AT
Bioinformatics; 2021 Dec; 38(1):294-296. PubMed ID: 34270693
[TBL] [Abstract][Full Text] [Related]
22. Tissue proteomics repositories for data reanalysis.
Stroggilos R; Tserga A; Zoidakis J; Vlahou A; Makridakis M
Mass Spectrom Rev; 2023 Aug; ():. PubMed ID: 37534389
[TBL] [Abstract][Full Text] [Related]
23. A large-scale analysis of bioinformatics code on GitHub.
Russell PH; Johnson RL; Ananthan S; Harnke B; Carlson NE
PLoS One; 2018; 13(10):e0205898. PubMed ID: 30379882
[TBL] [Abstract][Full Text] [Related]
24. The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium.
Côté RG; Griss J; Dianes JA; Wang R; Wright JC; van den Toorn HW; van Breukelen B; Heck AJ; Hulstaert N; Martens L; Reisinger F; Csordas A; Ovelleiro D; Perez-Rivevol Y; Barsnes H; Hermjakob H; Vizcaíno JA
Mol Cell Proteomics; 2012 Dec; 11(12):1682-9. PubMed ID: 22949509
[TBL] [Abstract][Full Text] [Related]
25. mpwR: an R package for comparing performance of mass spectrometry-based proteomic workflows.
Kardell O; Breimann S; Hauck SM
Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37267150
[TBL] [Abstract][Full Text] [Related]
26. Pyteomics--a Python framework for exploratory data analysis and rapid software prototyping in proteomics.
Goloborodko AA; Levitsky LI; Ivanov MV; Gorshkov MV
J Am Soc Mass Spectrom; 2013 Feb; 24(2):301-4. PubMed ID: 23292976
[TBL] [Abstract][Full Text] [Related]
27. IPeak: An open source tool to combine results from multiple MS/MS search engines.
Wen B; Du C; Li G; Ghali F; Jones AR; Käll L; Xu S; Zhou R; Ren Z; Feng Q; Xu X; Wang J
Proteomics; 2015 Sep; 15(17):2916-20. PubMed ID: 25951428
[TBL] [Abstract][Full Text] [Related]
28. pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive.
Choudhary S
F1000Res; 2019; 8():532. PubMed ID: 31114675
[TBL] [Abstract][Full Text] [Related]
29. Sharing and organizing research products as R packages.
Vuorre M; Crump MJC
Behav Res Methods; 2021 Apr; 53(2):792-802. PubMed ID: 32875401
[TBL] [Abstract][Full Text] [Related]
30. Automated workflow composition in mass spectrometry-based proteomics.
Palmblad M; Lamprecht AL; Ison J; Schwämmle V
Bioinformatics; 2019 Feb; 35(4):656-664. PubMed ID: 30060113
[TBL] [Abstract][Full Text] [Related]
31. In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.
Audain E; Uszkoreit J; Sachsenberg T; Pfeuffer J; Liang X; Hermjakob H; Sanchez A; Eisenacher M; Reinert K; Tabb DL; Kohlbacher O; Perez-Riverol Y
J Proteomics; 2017 Jan; 150():170-182. PubMed ID: 27498275
[TBL] [Abstract][Full Text] [Related]
32. Reproducible acquisition, management and meta-analysis of nucleotide sequence (meta)data using q2-fondue.
Ziemski M; Adamov A; Kim L; Flörl L; Bokulich NA
Bioinformatics; 2022 Nov; 38(22):5081-5091. PubMed ID: 36130056
[TBL] [Abstract][Full Text] [Related]
33.
Wolski WE; Nanni P; Grossmann J; d'Errico M; Schlapbach R; Panse C
J Proteome Res; 2023 Apr; 22(4):1092-1104. PubMed ID: 36939687
[TBL] [Abstract][Full Text] [Related]
34. A proteomics sample metadata representation for multiomics integration and big data analysis.
Dai C; Füllgrabe A; Pfeuffer J; Solovyeva EM; Deng J; Moreno P; Kamatchinathan S; Kundu DJ; George N; Fexova S; Grüning B; Föll MC; Griss J; Vaudel M; Audain E; Locard-Paulet M; Turewicz M; Eisenacher M; Uszkoreit J; Van Den Bossche T; Schwämmle V; Webel H; Schulze S; Bouyssié D; Jayaram S; Duggineni VK; Samaras P; Wilhelm M; Choi M; Wang M; Kohlbacher O; Brazma A; Papatheodorou I; Bandeira N; Deutsch EW; Vizcaíno JA; Bai M; Sachsenberg T; Levitsky LI; Perez-Riverol Y
Nat Commun; 2021 Oct; 12(1):5854. PubMed ID: 34615866
[TBL] [Abstract][Full Text] [Related]
35. Microbench: automated metadata management for systems biology benchmarking and reproducibility in Python.
Lubbock ALR; Lopez CF
Bioinformatics; 2022 Oct; 38(20):4823-4825. PubMed ID: 36000837
[TBL] [Abstract][Full Text] [Related]
36. The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data.
Häkkinen J; Vincic G; Månsson O; Wårell K; Levander F
J Proteome Res; 2009 Jun; 8(6):3037-43. PubMed ID: 19354269
[TBL] [Abstract][Full Text] [Related]
37. PDV: an integrative proteomics data viewer.
Li K; Vaudel M; Zhang B; Ren Y; Wen B
Bioinformatics; 2019 Apr; 35(7):1249-1251. PubMed ID: 30169737
[TBL] [Abstract][Full Text] [Related]
38. PACOM: A Versatile Tool for Integrating, Filtering, Visualizing, and Comparing Multiple Large Mass Spectrometry Proteomics Data Sets.
Martínez-Bartolomé S; Medina-Aunon JA; López-García MÁ; González-Tejedo C; Prieto G; Navajas R; Salazar-Donate E; Fernández-Costa C; Yates JR; Albar JP
J Proteome Res; 2018 Apr; 17(4):1547-1558. PubMed ID: 29558135
[TBL] [Abstract][Full Text] [Related]
39. The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again.
González-Beltrán A; Neumann S; Maguire E; Sansone SA; Rocca-Serra P
BMC Bioinformatics; 2014; 15 Suppl 1(Suppl 1):S11. PubMed ID: 24564732
[TBL] [Abstract][Full Text] [Related]
40. glyXtool
Pioch M; Hoffmann M; Pralow A; Reichl U; Rapp E
Anal Chem; 2018 Oct; 90(20):11908-11916. PubMed ID: 30252445
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
