These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
176 related articles for article (PubMed ID: 34364321)
1. Markov state models from hierarchical density-based assignment. Mitxelena I; López X; de Sancho D J Chem Phys; 2021 Aug; 155(5):054102. PubMed ID: 34364321 [TBL] [Abstract][Full Text] [Related]
2. Hierarchical Nyström methods for constructing Markov state models for conformational dynamics. Yao Y; Cui RZ; Bowman GR; Silva DA; Sun J; Huang X J Chem Phys; 2013 May; 138(17):174106. PubMed ID: 23656113 [TBL] [Abstract][Full Text] [Related]
3. On the advantages of exploiting memory in Markov state models for biomolecular dynamics. Cao S; Montoya-Castillo A; Wang W; Markland TE; Huang X J Chem Phys; 2020 Jul; 153(1):014105. PubMed ID: 32640825 [TBL] [Abstract][Full Text] [Related]
4. An efficient Bayesian kinetic lumping algorithm to identify metastable conformational states via Gibbs sampling. Wang W; Liang T; Sheong FK; Fan X; Huang X J Chem Phys; 2018 Aug; 149(7):072337. PubMed ID: 30134698 [TBL] [Abstract][Full Text] [Related]
5. RPnet: a reverse-projection-based neural network for coarse-graining metastable conformational states for protein dynamics. Gu H; Wang W; Cao S; Unarta IC; Yao Y; Sheong FK; Huang X Phys Chem Chem Phys; 2022 Jan; 24(3):1462-1474. PubMed ID: 34985469 [TBL] [Abstract][Full Text] [Related]
6. Information Bottleneck Approach for Markov Model Construction. Wang D; Qiu Y; Beyerle ER; Huang X; Tiwary P J Chem Theory Comput; 2024 Jun; 20(12):5352-5367. PubMed ID: 38859575 [TBL] [Abstract][Full Text] [Related]
7. Dynamic neutron scattering from conformational dynamics. II. Application using molecular dynamics simulation and Markov modeling. Yi Z; Lindner B; Prinz JH; Noé F; Smith JC J Chem Phys; 2013 Nov; 139(17):175102. PubMed ID: 24206335 [TBL] [Abstract][Full Text] [Related]
8. Tutorial on how to build non-Markovian dynamic models from molecular dynamics simulations for studying protein conformational changes. Wu Y; Cao S; Qiu Y; Huang X J Chem Phys; 2024 Mar; 160(12):. PubMed ID: 38516972 [TBL] [Abstract][Full Text] [Related]
9. Persistent topology and metastable state in conformational dynamics. Chang HW; Bacallado S; Pande VS; Carlsson GE PLoS One; 2013; 8(4):e58699. PubMed ID: 23565139 [TBL] [Abstract][Full Text] [Related]
10. Robust Density-Based Clustering To Identify Metastable Conformational States of Proteins. Sittel F; Stock G J Chem Theory Comput; 2016 May; 12(5):2426-35. PubMed ID: 27058020 [TBL] [Abstract][Full Text] [Related]
11. A comparison of weighted ensemble and Markov state model methodologies. Feng H; Costaouec R; Darve E; Izaguirre JA J Chem Phys; 2015 Jun; 142(21):214113. PubMed ID: 26049485 [TBL] [Abstract][Full Text] [Related]
18. Identifying and correcting non-Markov states in peptide conformational dynamics. Nerukh D; Jensen CH; Glen RC J Chem Phys; 2010 Feb; 132(8):084104. PubMed ID: 20192287 [TBL] [Abstract][Full Text] [Related]
19. Building Markov State Models for Periodically Driven Non-Equilibrium Systems. Wang H; Schütte C J Chem Theory Comput; 2015 Apr; 11(4):1819-31. PubMed ID: 26889513 [TBL] [Abstract][Full Text] [Related]
20. Markov state models provide insights into dynamic modulation of protein function. Shukla D; Hernández CX; Weber JK; Pande VS Acc Chem Res; 2015 Feb; 48(2):414-22. PubMed ID: 25625937 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]