80 related articles for article (PubMed ID: 34368994)
1. Conservation of Hot Spots and Ligand Binding Sites in Protein Models by AlphaFold2.
Bekar-Cesaretli AA; Khan O; Nguyen T; Kozakov D; Joseph-Mccarthy D; Vajda S
J Chem Inf Model; 2024 Feb; 64(3):960-973. PubMed ID: 38253327
[TBL] [Abstract][Full Text] [Related]
2. Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment.
Lensink MF; Brysbaert G; Mauri T; Nadzirin N; Velankar S; Chaleil RAG; Clarence T; Bates PA; Kong R; Liu B; Yang G; Liu M; Shi H; Lu X; Chang S; Roy RS; Quadir F; Liu J; Cheng J; Antoniak A; Czaplewski C; Giełdoń A; Kogut M; Lipska AG; Liwo A; Lubecka EA; Maszota-Zieleniak M; Sieradzan AK; Ślusarz R; Wesołowski PA; Zięba K; Del Carpio Muñoz CA; Ichiishi E; Harmalkar A; Gray JJ; Bonvin AMJJ; Ambrosetti F; Vargas Honorato R; Jandova Z; Jiménez-García B; Koukos PI; Van Keulen S; Van Noort CW; Réau M; Roel-Touris J; Kotelnikov S; Padhorny D; Porter KA; Alekseenko A; Ignatov M; Desta I; Ashizawa R; Sun Z; Ghani U; Hashemi N; Vajda S; Kozakov D; Rosell M; Rodríguez-Lumbreras LA; Fernandez-Recio J; Karczynska A; Grudinin S; Yan Y; Li H; Lin P; Huang SY; Christoffer C; Terashi G; Verburgt J; Sarkar D; Aderinwale T; Wang X; Kihara D; Nakamura T; Hanazono Y; Gowthaman R; Guest JD; Yin R; Taherzadeh G; Pierce BG; Barradas-Bautista D; Cao Z; Cavallo L; Oliva R; Sun Y; Zhu S; Shen Y; Park T; Woo H; Yang J; Kwon S; Won J; Seok C; Kiyota Y; Kobayashi S; Harada Y; Takeda-Shitaka M; Kundrotas PJ; Singh A; Vakser IA; Dapkūnas J; Olechnovič K; Venclovas Č; Duan R; Qiu L; Xu X; Zhang S; Zou X; Wodak SJ
Proteins; 2021 Dec; 89(12):1800-1823. PubMed ID: 34453465
[TBL] [Abstract][Full Text] [Related]
3. Target highlights in CASP14: Analysis of models by structure providers.
Alexander LT; Lepore R; Kryshtafovych A; Adamopoulos A; Alahuhta M; Arvin AM; Bomble YJ; Böttcher B; Breyton C; Chiarini V; Chinnam NB; Chiu W; Fidelis K; Grinter R; Gupta GD; Hartmann MD; Hayes CS; Heidebrecht T; Ilari A; Joachimiak A; Kim Y; Linares R; Lovering AL; Lunin VV; Lupas AN; Makbul C; Michalska K; Moult J; Mukherjee PK; Nutt WS; Oliver SL; Perrakis A; Stols L; Tainer JA; Topf M; Tsutakawa SE; Valdivia-Delgado M; Schwede T
Proteins; 2021 Dec; 89(12):1647-1672. PubMed ID: 34561912
[TBL] [Abstract][Full Text] [Related]
4. Evaluation of model refinement in CASP14.
Simpkin AJ; Sánchez Rodríguez F; Mesdaghi S; Kryshtafovych A; Rigden DJ
Proteins; 2021 Dec; 89(12):1852-1869. PubMed ID: 34288138
[TBL] [Abstract][Full Text] [Related]
5. Biological and functional relevance of CASP predictions.
Liu T; Ish-Shalom S; Torng W; Lafita A; Bock C; Mort M; Cooper DN; Bliven S; Capitani G; Mooney SD; Altman RB
Proteins; 2018 Mar; 86 Suppl 1(Suppl Suppl 1):374-386. PubMed ID: 28975675
[TBL] [Abstract][Full Text] [Related]
6. Focused grid-based resampling for protein docking and mapping.
Mamonov AB; Moghadasi M; Mirzaei H; Zarbafian S; Grove LE; Bohnuud T; Vakili P; Ch Paschalidis I; Vajda S; Kozakov D
J Comput Chem; 2016 Apr; 37(11):961-70. PubMed ID: 26837000
[TBL] [Abstract][Full Text] [Related]
7. Assessment of protein-ligand complexes in CASP15.
Robin X; Studer G; Durairaj J; Eberhardt J; Schwede T; Walters WP
Proteins; 2023 Dec; 91(12):1811-1821. PubMed ID: 37795762
[TBL] [Abstract][Full Text] [Related]
8. MCCS, a novel characterization method for protein-ligand complex.
Chen M; Feng Z; Wang S; Lin W; Xie XQ
Brief Bioinform; 2021 Jul; 22(4):. PubMed ID: 33051641
[TBL] [Abstract][Full Text] [Related]
9. Domain-Based Protein Docking with Extremely Large Conformational Changes.
Christoffer C; Kihara D
J Mol Biol; 2022 Nov; 434(21):167820. PubMed ID: 36089054
[TBL] [Abstract][Full Text] [Related]
10. Assessing the functional impact of protein binding site definition.
Nandigrami P; Fiser A
Protein Sci; 2024 Jun; 33(6):e5026. PubMed ID: 38757384
[TBL] [Abstract][Full Text] [Related]
11. Atomic Details of Carbon-Based Nanomolecules Interacting with Proteins.
Di Costanzo L; Geremia S
Molecules; 2020 Aug; 25(15):. PubMed ID: 32759758
[TBL] [Abstract][Full Text] [Related]
12. Improved prediction of MHC-peptide binding using protein language models.
Hashemi N; Hao B; Ignatov M; Paschalidis IC; Vakili P; Vajda S; Kozakov D
Front Bioinform; 2023; 3():1207380. PubMed ID: 37663788
[TBL] [Abstract][Full Text] [Related]
13. FTMove: A Web Server for Detection and Analysis of Cryptic and Allosteric Binding Sites by Mapping Multiple Protein Structures.
Egbert M; Jones G; Collins MR; Kozakov D; Vajda S
J Mol Biol; 2022 Jun; 434(11):167587. PubMed ID: 35662465
[TBL] [Abstract][Full Text] [Related]
14. Elucidation of protein function using computational docking and hotspot analysis by ClusPro and FTMap.
Jones G; Jindal A; Ghani U; Kotelnikov S; Egbert M; Hashemi N; Vajda S; Padhorny D; Kozakov D
Acta Crystallogr D Struct Biol; 2022 Jun; 78(Pt 6):690-697. PubMed ID: 35647916
[TBL] [Abstract][Full Text] [Related]
15. Structure-conditioned amino-acid couplings: How contact geometry affects pairwise sequence preferences.
Holland J; Grigoryan G
Protein Sci; 2022 Apr; 31(4):900-917. PubMed ID: 35060221
[TBL] [Abstract][Full Text] [Related]
16. Critical assessment of methods of protein structure prediction (CASP)-Round XIV.
Kryshtafovych A; Schwede T; Topf M; Fidelis K; Moult J
Proteins; 2021 Dec; 89(12):1607-1617. PubMed ID: 34533838
[TBL] [Abstract][Full Text] [Related]
17. Assessing the binding properties of CASP14 targets and models.
Egbert M; Ghani U; Ashizawa R; Kotelnikov S; Nguyen T; Desta I; Hashemi N; Padhorny D; Kozakov D; Vajda S
Proteins; 2021 Dec; 89(12):1922-1939. PubMed ID: 34368994
[TBL] [Abstract][Full Text] [Related]
18. Conservation of binding properties in protein models.
Egbert M; Porter KA; Ghani U; Kotelnikov S; Nguyen T; Ashizawa R; Kozakov D; Vajda S
Comput Struct Biotechnol J; 2021; 19():2549-2566. PubMed ID: 34025942
[TBL] [Abstract][Full Text] [Related]
19.
; ; . PubMed ID:
[No Abstract] [Full Text] [Related]
20.
; ; . PubMed ID:
[No Abstract] [Full Text] [Related]
[Next] [New Search]