207 related articles for article (PubMed ID: 34381973)
1.
Zogopoulos VL; Saxami G; Malatras A; Angelopoulou A; Jen CH; Duddy WJ; Daras G; Hatzopoulos P; Westhead DR; Michalopoulos I
iScience; 2021 Aug; 24(8):102848. PubMed ID: 34381973
[TBL] [Abstract][Full Text] [Related]
2. HGCA2.0: An RNA-Seq Based Webtool for Gene Coexpression Analysis in
Zogopoulos VL; Malatras A; Kyriakidis K; Charalampous C; Makrygianni EA; Duguez S; Koutsi MA; Pouliou M; Vasileiou C; Duddy WJ; Agelopoulos M; Chrousos GP; Iconomidou VA; Michalopoulos I
Cells; 2023 Jan; 12(3):. PubMed ID: 36766730
[TBL] [Abstract][Full Text] [Related]
3. Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks.
Vandepoele K; Quimbaya M; Casneuf T; De Veylder L; Van de Peer Y
Plant Physiol; 2009 Jun; 150(2):535-46. PubMed ID: 19357200
[TBL] [Abstract][Full Text] [Related]
4. CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
Srinivasasainagendra V; Page GP; Mehta T; Coulibaly I; Loraine AE
Plant Physiol; 2008 Jul; 147(3):1004-16. PubMed ID: 18467456
[TBL] [Abstract][Full Text] [Related]
5. Arabidopsis Gene Family Profiler (aGFP)--user-oriented transcriptomic database with easy-to-use graphic interface.
Dupl'áková N; Renák D; Hovanec P; Honysová B; Twell D; Honys D
BMC Plant Biol; 2007 Jul; 7():39. PubMed ID: 17645793
[TBL] [Abstract][Full Text] [Related]
6. Gene coexpression analysis in
Zogopoulos VL; Malatras A; Michalopoulos I
STAR Protoc; 2022 Mar; 3(1):101208. PubMed ID: 35243384
[TBL] [Abstract][Full Text] [Related]
7. Transcriptional coordination of the metabolic network in Arabidopsis.
Wei H; Persson S; Mehta T; Srinivasasainagendra V; Chen L; Page GP; Somerville C; Loraine A
Plant Physiol; 2006 Oct; 142(2):762-74. PubMed ID: 16920875
[TBL] [Abstract][Full Text] [Related]
8. Local coexpression domains of two to four genes in the genome of Arabidopsis.
Ren XY; Fiers MW; Stiekema WJ; Nap JP
Plant Physiol; 2005 Jun; 138(2):923-34. PubMed ID: 15923337
[TBL] [Abstract][Full Text] [Related]
9. Coexpression of neighboring genes in the genome of Arabidopsis thaliana.
Williams EJ; Bowles DJ
Genome Res; 2004 Jun; 14(6):1060-7. PubMed ID: 15173112
[TBL] [Abstract][Full Text] [Related]
10. Large cliques in Arabidopsis gene coexpression network and motif discovery.
Zheng X; Liu T; Yang Z; Wang J
J Plant Physiol; 2011 Apr; 168(6):611-8. PubMed ID: 21044807
[TBL] [Abstract][Full Text] [Related]
11. Differential Coexpression Analysis Reveals Extensive Rewiring of Arabidopsis Gene Coexpression in Response to Pseudomonas syringae Infection.
Jiang Z; Dong X; Li ZG; He F; Zhang Z
Sci Rep; 2016 Oct; 6():35064. PubMed ID: 27721457
[TBL] [Abstract][Full Text] [Related]
12. Comparative study of RNA-seq- and microarray-derived coexpression networks in Arabidopsis thaliana.
Giorgi FM; Del Fabbro C; Licausi F
Bioinformatics; 2013 Mar; 29(6):717-24. PubMed ID: 23376351
[TBL] [Abstract][Full Text] [Related]
13. ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression.
Aoki Y; Okamura Y; Tadaka S; Kinoshita K; Obayashi T
Plant Cell Physiol; 2016 Jan; 57(1):e5. PubMed ID: 26546318
[TBL] [Abstract][Full Text] [Related]
14. A transcriptional dynamic network during Arabidopsis thaliana pollen development.
Wang J; Qiu X; Li Y; Deng Y; Shi T
BMC Syst Biol; 2011; 5 Suppl 3(Suppl 3):S8. PubMed ID: 22784627
[TBL] [Abstract][Full Text] [Related]
15. Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family.
Manfield IW; Devlin PF; Jen CH; Westhead DR; Gilmartin PM
Plant Physiol; 2007 Feb; 143(2):941-58. PubMed ID: 17208962
[TBL] [Abstract][Full Text] [Related]
16. The Arabidopsis co-expression tool (ACT): a WWW-based tool and database for microarray-based gene expression analysis.
Jen CH; Manfield IW; Michalopoulos I; Pinney JW; Willats WG; Gilmartin PM; Westhead DR
Plant J; 2006 Apr; 46(2):336-48. PubMed ID: 16623895
[TBL] [Abstract][Full Text] [Related]
17. A Predictive Coexpression Network Identifies Novel Genes Controlling the Seed-to-Seedling Phase Transition in Arabidopsis thaliana.
Silva AT; Ribone PA; Chan RL; Ligterink W; Hilhorst HW
Plant Physiol; 2016 Apr; 170(4):2218-31. PubMed ID: 26888061
[TBL] [Abstract][Full Text] [Related]
18. Identifying set-wise differential co-expression in gene expression microarray data.
Cho SB; Kim J; Kim JH
BMC Bioinformatics; 2009 Apr; 10():109. PubMed ID: 19371436
[TBL] [Abstract][Full Text] [Related]
19. AtCAST3.0 update: a web-based tool for analysis of transcriptome data by searching similarities in gene expression profiles.
Kakei Y; Shimada Y
Plant Cell Physiol; 2015 Jan; 56(1):e7. PubMed ID: 25505006
[TBL] [Abstract][Full Text] [Related]
20. MutRank: an R shiny web-application for exploratory targeted mutual rank-based coexpression analyses integrated with user-provided supporting information.
Poretsky E; Huffaker A
PeerJ; 2020; 8():e10264. PubMed ID: 33240618
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]