62 related articles for article (PubMed ID: 34382192)
1. Using Open Chromatin Enrichment and Network Hi-C (OCEAN-C) to Identify Open Chromatin Interactions.
Jia L; Li C; Li T
Methods Mol Biol; 2021; 2351():211-227. PubMed ID: 34382192
[TBL] [Abstract][Full Text] [Related]
2. Transcriptional Hubs Within Cliques in Ensemble Hi-C Chromatin Interaction Networks.
Melkus G; Sizovs A; Rucevskis P; Silina S
J Comput Biol; 2024 Jun; 31(6):589-596. PubMed ID: 38768423
[No Abstract] [Full Text] [Related]
3. Detecting hierarchical genome folding with network modularity.
Norton HK; Emerson DJ; Huang H; Kim J; Titus KR; Gu S; Bassett DS; Phillips-Cremins JE
Nat Methods; 2018 Feb; 15(2):119-122. PubMed ID: 29334377
[TBL] [Abstract][Full Text] [Related]
4. ATACdb: a comprehensive human chromatin accessibility database.
Wang F; Bai X; Wang Y; Jiang Y; Ai B; Zhang Y; Liu Y; Xu M; Wang Q; Han X; Pan Q; Li Y; Li X; Zhang J; Zhao J; Zhang G; Feng C; Zhu J; Li C
Nucleic Acids Res; 2021 Jan; 49(D1):D55-D64. PubMed ID: 33125076
[TBL] [Abstract][Full Text] [Related]
5. DeepTACT: predicting 3D chromatin contacts via bootstrapping deep learning.
Li W; Wong WH; Jiang R
Nucleic Acids Res; 2019 Jun; 47(10):e60. PubMed ID: 30869141
[TBL] [Abstract][Full Text] [Related]
6. C2c: Predicting Micro-C from Hi-C.
Zhu H; Liu T; Wang Z
Genes (Basel); 2024 May; 15(6):. PubMed ID: 38927609
[TBL] [Abstract][Full Text] [Related]
7. On the existence and functionality of topologically associating domains.
Beagan JA; Phillips-Cremins JE
Nat Genet; 2020 Jan; 52(1):8-16. PubMed ID: 31925403
[TBL] [Abstract][Full Text] [Related]
8. Chromatin conformation signatures of cellular differentiation.
Fraser J; Rousseau M; Shenker S; Ferraiuolo MA; Hayashizaki Y; Blanchette M; Dostie J
Genome Biol; 2009; 10(4):R37. PubMed ID: 19374771
[TBL] [Abstract][Full Text] [Related]
9. Graph embedding and unsupervised learning predict genomic sub-compartments from HiC chromatin interaction data.
Ashoor H; Chen X; Rosikiewicz W; Wang J; Cheng A; Wang P; Ruan Y; Li S
Nat Commun; 2020 Mar; 11(1):1173. PubMed ID: 32127534
[TBL] [Abstract][Full Text] [Related]
10. Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops.
Zhou Y; Cheng X; Yang Y; Li T; Li J; Huang TH; Wang J; Lin S; Jin VX
Genome Med; 2020 Aug; 12(1):69. PubMed ID: 32787954
[TBL] [Abstract][Full Text] [Related]
11. HiCAR: Analysis of Open Chromatin Associated Long-range Chromatin Interaction Using Low-Input Materials.
Wei X; Tran D; Diao Y
Curr Protoc; 2023 Oct; 3(10):e899. PubMed ID: 37818863
[TBL] [Abstract][Full Text] [Related]
12. R Tutorial: Detection of Differentially Interacting Chromatin Regions From Multiple Hi-C Datasets.
Stansfield JC; Tran D; Nguyen T; Dozmorov MG
Curr Protoc Bioinformatics; 2019 Jun; 66(1):e76. PubMed ID: 31125519
[TBL] [Abstract][Full Text] [Related]
13. Schema: metric learning enables interpretable synthesis of heterogeneous single-cell modalities.
Singh R; Hie BL; Narayan A; Berger B
Genome Biol; 2021 May; 22(1):131. PubMed ID: 33941239
[TBL] [Abstract][Full Text] [Related]
14. Systematic assessment of gene co-regulation within chromatin domains determines differentially active domains across human cancers.
Zufferey M; Liu Y; Tavernari D; Mina M; Ciriello G
Genome Biol; 2021 Aug; 22(1):218. PubMed ID: 34344431
[TBL] [Abstract][Full Text] [Related]
15. CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data.
Cairns J; Freire-Pritchett P; Wingett SW; Várnai C; Dimond A; Plagnol V; Zerbino D; Schoenfelder S; Javierre BM; Osborne C; Fraser P; Spivakov M
Genome Biol; 2016 Jun; 17(1):127. PubMed ID: 27306882
[TBL] [Abstract][Full Text] [Related]
16. Hi-Tag: a simple and efficient method for identifying protein-mediated long-range chromatin interactions with low cell numbers.
Qi X; Zhang L; Zhao Q; Zhou P; Zhang S; Li J; Zheng Z; Xiang Y; Dai X; Jin Z; Jian Y; Li X; Fu L; Zhao S
Sci China Life Sci; 2024 May; 67(5):1027-1034. PubMed ID: 38280143
[TBL] [Abstract][Full Text] [Related]
17. Nucleome Browser: an integrative and multimodal data navigation platform for 4D Nucleome.
Zhu X; Zhang Y; Wang Y; Tian D; Belmont AS; Swedlow JR; Ma J
Nat Methods; 2022 Aug; 19(8):911-913. PubMed ID: 35864167
[No Abstract] [Full Text] [Related]
18. Topological isolation of developmental regulators in mammalian genomes.
Wu HJ; Landshammer A; Stamenova EK; Bolondi A; Kretzmer H; Meissner A; Michor F
Nat Commun; 2021 Aug; 12(1):4897. PubMed ID: 34385432
[TBL] [Abstract][Full Text] [Related]
19. Acute depletion of CTCF rewires genome-wide chromatin accessibility.
Xu B; Wang H; Wright S; Hyle J; Zhang Y; Shao Y; Niu M; Fan Y; Rosikiewicz W; Djekidel MN; Peng J; Lu R; Li C
Genome Biol; 2021 Aug; 22(1):244. PubMed ID: 34429148
[TBL] [Abstract][Full Text] [Related]
20. Assessment of 3D Interactions Between Promoters and Distal Regulatory Elements with Promoter Capture Hi-C (PCHi-C).
Karasu N; Sexton T
Methods Mol Biol; 2021; 2351():229-248. PubMed ID: 34382193
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
