These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

157 related articles for article (PubMed ID: 34383778)

  • 1. easyXpress: An R package to analyze and visualize high-throughput C. elegans microscopy data generated using CellProfiler.
    Nyaanga J; Crombie TA; Widmayer SJ; Andersen EC
    PLoS One; 2021; 16(8):e0252000. PubMed ID: 34383778
    [TBL] [Abstract][Full Text] [Related]  

  • 2. COPASutils: an R package for reading, processing, and visualizing data from COPAS large-particle flow cytometers.
    Shimko TC; Andersen EC
    PLoS One; 2014; 9(10):e111090. PubMed ID: 25329171
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CellProfiler 4: improvements in speed, utility and usability.
    Stirling DR; Swain-Bowden MJ; Lucas AM; Carpenter AE; Cimini BA; Goodman A
    BMC Bioinformatics; 2021 Sep; 22(1):433. PubMed ID: 34507520
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Worm-align and Worm_CP, Two Open-Source Pipelines for Straightening and Quantification of Fluorescence Image Data Obtained from Caenorhabditis elegans.
    Okkenhaug H; Chauve L; Masoudzadeh F; Okkenhaug L; Casanueva O
    J Vis Exp; 2020 May; (159):. PubMed ID: 32538914
    [TBL] [Abstract][Full Text] [Related]  

  • 5. An image analysis toolbox for high-throughput C. elegans assays.
    Wählby C; Kamentsky L; Liu ZH; Riklin-Raviv T; Conery AL; O'Rourke EJ; Sokolnicki KL; Visvikis O; Ljosa V; Irazoqui JE; Golland P; Ruvkun G; Ausubel FM; Carpenter AE
    Nat Methods; 2012 Apr; 9(7):714-6. PubMed ID: 22522656
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CellProfiler Tracer: exploring and validating high-throughput, time-lapse microscopy image data.
    Bray MA; Carpenter AE
    BMC Bioinformatics; 2015 Nov; 16():368. PubMed ID: 26537300
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CellProfiler 3.0: Next-generation image processing for biology.
    McQuin C; Goodman A; Chernyshev V; Kamentsky L; Cimini BA; Karhohs KW; Doan M; Ding L; Rafelski SM; Thirstrup D; Wiegraebe W; Singh S; Becker T; Caicedo JC; Carpenter AE
    PLoS Biol; 2018 Jul; 16(7):e2005970. PubMed ID: 29969450
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CellProfiler Analyst 3.0: accessible data exploration and machine learning for image analysis.
    Stirling DR; Carpenter AE; Cimini BA
    Bioinformatics; 2021 Nov; 37(21):3992-3994. PubMed ID: 34478488
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Cytokit: a single-cell analysis toolkit for high dimensional fluorescent microscopy imaging.
    Czech E; Aksoy BA; Aksoy P; Hammerbacher J
    BMC Bioinformatics; 2019 Sep; 20(1):448. PubMed ID: 31477013
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Automating Aggregate Quantification in Caenorhabditis elegans.
    Vaziriyan-Sani AS; Handy RD; Walker AC; Pagolu CN; Enslow SM; Czyż DM
    J Vis Exp; 2021 Oct; (176):. PubMed ID: 34723951
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Microscopy Image Browser: A Platform for Segmentation and Analysis of Multidimensional Datasets.
    Belevich I; Joensuu M; Kumar D; Vihinen H; Jokitalo E
    PLoS Biol; 2016 Jan; 14(1):e1002340. PubMed ID: 26727152
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Bi-channel image registration and deep-learning segmentation (BIRDS) for efficient, versatile 3D mapping of mouse brain.
    Wang X; Zeng W; Yang X; Zhang Y; Fang C; Zeng S; Han Y; Fei P
    Elife; 2021 Jan; 10():. PubMed ID: 33459255
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CellProfiler and KNIME: Open-Source Tools for High-Content Screening.
    Stöter M; Janosch A; Barsacchi R; Bickle M
    Methods Mol Biol; 2019; 1953():43-60. PubMed ID: 30912015
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Analysis of in vivo single cell behavior by high throughput, human-in-the-loop segmentation of three-dimensional images.
    Chiang M; Hallman S; Cinquin A; de Mochel NR; Paz A; Kawauchi S; Calof AL; Cho KW; Fowlkes CC; Cinquin O
    BMC Bioinformatics; 2015 Nov; 16():397. PubMed ID: 26607933
    [TBL] [Abstract][Full Text] [Related]  

  • 15. EBImage--an R package for image processing with applications to cellular phenotypes.
    Pau G; Fuchs F; Sklyar O; Boutros M; Huber W
    Bioinformatics; 2010 Apr; 26(7):979-81. PubMed ID: 20338898
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Automated Processing of Imaging Data through Multi-tiered Classification of Biological Structures Illustrated Using Caenorhabditis elegans.
    Zhan M; Crane MM; Entchev EV; Caballero A; Fernandes de Abreu DA; Ch'ng Q; Lu H
    PLoS Comput Biol; 2015 Apr; 11(4):e1004194. PubMed ID: 25910032
    [TBL] [Abstract][Full Text] [Related]  

  • 17. QuantWorm: a comprehensive software package for Caenorhabditis elegans phenotypic assays.
    Jung SK; Aleman-Meza B; Riepe C; Zhong W
    PLoS One; 2014; 9(1):e84830. PubMed ID: 24416295
    [TBL] [Abstract][Full Text] [Related]  

  • 18. BactMAP: An R package for integrating, analyzing and visualizing bacterial microscopy data.
    van Raaphorst R; Kjos M; Veening JW
    Mol Microbiol; 2020 Jan; 113(1):297-308. PubMed ID: 31693257
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ftmsRanalysis: An R package for exploratory data analysis and interactive visualization of FT-MS data.
    Bramer LM; White AM; Stratton KG; Thompson AM; Claborne D; Hofmockel K; McCue LA
    PLoS Comput Biol; 2020 Mar; 16(3):e1007654. PubMed ID: 32176690
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.
    Kamentsky L; Jones TR; Fraser A; Bray MA; Logan DJ; Madden KL; Ljosa V; Rueden C; Eliceiri KW; Carpenter AE
    Bioinformatics; 2011 Apr; 27(8):1179-80. PubMed ID: 21349861
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.