130 related articles for article (PubMed ID: 34386295)
1. Federated Galaxy: Biomedical Computing at the Frontier.
Afgan E; Jalili V; Goonasekera N; Taylor J; Goecks J
IEEE Int Conf Cloud Comput; 2018 Jul; 2018():. PubMed ID: 34386295
[TBL] [Abstract][Full Text] [Related]
2. Cloud bursting galaxy: federated identity and access management.
Jalili V; Afgan E; Taylor J; Goecks J
Bioinformatics; 2020 Jan; 36(1):1-9. PubMed ID: 31197310
[TBL] [Abstract][Full Text] [Related]
3. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.
Afgan E; Baker D; Batut B; van den Beek M; Bouvier D; Cech M; Chilton J; Clements D; Coraor N; Grüning BA; Guerler A; Hillman-Jackson J; Hiltemann S; Jalili V; Rasche H; Soranzo N; Goecks J; Taylor J; Nekrutenko A; Blankenberg D
Nucleic Acids Res; 2018 Jul; 46(W1):W537-W544. PubMed ID: 29790989
[TBL] [Abstract][Full Text] [Related]
4. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.
Jalili V; Afgan E; Gu Q; Clements D; Blankenberg D; Goecks J; Taylor J; Nekrutenko A
Nucleic Acids Res; 2020 Jul; 48(W1):W395-W402. PubMed ID: 32479607
[TBL] [Abstract][Full Text] [Related]
5. Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service.
Tangaro MA; Mandreoli P; Chiara M; Donvito G; Antonacci M; Parisi A; Bianco A; Romano A; Bianchi DM; Cangelosi D; Uva P; Molineris I; Nosi V; Calogero RA; Alessandri L; Pedrini E; Mordenti M; Bonetti E; Sangiorgi L; Pesole G; Zambelli F
BMC Bioinformatics; 2021 Nov; 22(Suppl 15):544. PubMed ID: 34749633
[TBL] [Abstract][Full Text] [Related]
6. Laniakea: an open solution to provide Galaxy "on-demand" instances over heterogeneous cloud infrastructures.
Tangaro MA; Donvito G; Antonacci M; Chiara M; Mandreoli P; Pesole G; Zambelli F
Gigascience; 2020 Apr; 9(4):. PubMed ID: 32252069
[TBL] [Abstract][Full Text] [Related]
7. Expanding the Galaxy's reference data.
VijayKrishna N; Joshi J; Coraor N; Hillman-Jackson J; Bouvier D; van den Beek M; Eguinoa I; Coppens F; Davis J; Stolarczyk M; Sheffield NC; Gladman S; Cuccuru G; Grüning B; Soranzo N; Rasche H; Langhorst BW; Bernt M; Fornika D; de Lima Morais DA; Barrette M; van Heusden P; Petrillo M; Puertas-Gallardo A; Patak A; Hotz HR; Blankenberg D
Bioinform Adv; 2022; 2(1):vbac030. PubMed ID: 35669346
[TBL] [Abstract][Full Text] [Related]
8. The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update.
Galaxy Community
Nucleic Acids Res; 2024 Jul; 52(W1):W83-W94. PubMed ID: 38769056
[TBL] [Abstract][Full Text] [Related]
9. NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy.
de Koning W; Miladi M; Hiltemann S; Heikema A; Hays JP; Flemming S; van den Beek M; Mustafa DA; Backofen R; Grüning B; Stubbs AP
Gigascience; 2020 Oct; 9(10):. PubMed ID: 33068114
[TBL] [Abstract][Full Text] [Related]
10. Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine.
Gu Q; Kumar A; Bray S; Creason A; Khanteymoori A; Jalili V; Grüning B; Goecks J
PLoS Comput Biol; 2021 Jun; 17(6):e1009014. PubMed ID: 34061826
[TBL] [Abstract][Full Text] [Related]
11. A single-cell RNA-sequencing training and analysis suite using the Galaxy framework.
Tekman M; Batut B; Ostrovsky A; Antoniewski C; Clements D; Ramirez F; Etherington GJ; Hotz HR; Scholtalbers J; Manning JR; Bellenger L; Doyle MA; Heydarian M; Huang N; Soranzo N; Moreno P; Mautner S; Papatheodorou I; Nekrutenko A; Taylor J; Blankenberg D; Backofen R; Grüning B
Gigascience; 2020 Oct; 9(10):. PubMed ID: 33079170
[TBL] [Abstract][Full Text] [Related]
12. GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians.
Gangiredla J; Rand H; Benisatto D; Payne J; Strittmatter C; Sanders J; Wolfgang WJ; Libuit K; Herrick JB; Prarat M; Toro M; Farrell T; Strain E
BMC Genomics; 2021 Feb; 22(1):114. PubMed ID: 33568057
[TBL] [Abstract][Full Text] [Related]
13. GalaxyCloudRunner: enhancing scalable computing for Galaxy.
Goonasekera N; Mahmoud A; Chilton J; Afgan E
Bioinformatics; 2021 Jul; 37(12):1763-1765. PubMed ID: 33104194
[TBL] [Abstract][Full Text] [Related]
14. Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology.
Cock PJ; Grüning BA; Paszkiewicz K; Pritchard L
PeerJ; 2013; 1():e167. PubMed ID: 24109552
[TBL] [Abstract][Full Text] [Related]
15. Galaxy mothur Toolset (GmT): a user-friendly application for 16S rRNA gene sequencing analysis using mothur.
Hiltemann SD; Boers SA; van der Spek PJ; Jansen R; Hays JP; Stubbs AP
Gigascience; 2019 Feb; 8(2):. PubMed ID: 30597007
[TBL] [Abstract][Full Text] [Related]
16. Tavaxy: integrating Taverna and Galaxy workflows with cloud computing support.
Abouelhoda M; Issa SA; Ghanem M
BMC Bioinformatics; 2012 May; 13():77. PubMed ID: 22559942
[TBL] [Abstract][Full Text] [Related]
17. Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud.
Afgan E; Sloggett C; Goonasekera N; Makunin I; Benson D; Crowe M; Gladman S; Kowsar Y; Pheasant M; Horst R; Lonie A
PLoS One; 2015; 10(10):e0140829. PubMed ID: 26501966
[TBL] [Abstract][Full Text] [Related]
18. SimText: a text mining framework for interactive analysis and visualization of similarities among biomedical entities.
Macnee M; Pérez-Palma E; Schumacher-Bass S; Dalton J; Leu C; Blankenberg D; Lal D
Bioinformatics; 2021 Nov; 37(22):4285-4287. PubMed ID: 34037702
[TBL] [Abstract][Full Text] [Related]
19. Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework.
Fahrner M; Föll MC; Grüning BA; Bernt M; Röst H; Schilling O
Gigascience; 2022 Feb; 11():. PubMed ID: 35166338
[TBL] [Abstract][Full Text] [Related]
20. Using Galaxy to Perform Large-Scale Interactive Data Analyses-An Update.
Ostrovsky A; Hillman-Jackson J; Bouvier D; Clements D; Afgan E; Blankenberg D; Schatz MC; Nekrutenko A; Taylor J; Team TG; Lariviere D
Curr Protoc; 2021 Feb; 1(2):e31. PubMed ID: 33583104
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
