BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

164 related articles for article (PubMed ID: 34394197)

  • 21. ViralFlow: A Versatile Automated Workflow for SARS-CoV-2 Genome Assembly, Lineage Assignment, Mutations and Intrahost Variant Detection.
    Dezordi FZ; Neto AMDS; Campos TL; Jeronimo PMC; Aksenen CF; Almeida SP; Wallau GL; On Behalf Of The Fiocruz Covid-Genomic Surveillance Network
    Viruses; 2022 Jan; 14(2):. PubMed ID: 35215811
    [TBL] [Abstract][Full Text] [Related]  

  • 22. VGEA: an RNA viral assembly toolkit.
    Oluniyi PE; Ajogbasile F; Oguzie J; Uwanibe J; Kayode A; Happi A; Ugwu A; Olumade T; Ogunsanya O; Eromon PE; Folarin O; Frost SDW; Heeney J; Happi CT
    PeerJ; 2021; 9():e12129. PubMed ID: 34567846
    [TBL] [Abstract][Full Text] [Related]  

  • 23. A framework for real-time monitoring, analysis and adaptive sampling of viral amplicon nanopore sequencing.
    Munro R; Holmes N; Moore C; Carlile M; Payne A; Tyson JR; Williams T; Alder C; Snell LB; Nebbia G; Santos R; Loose M
    Front Genet; 2023; 14():1138582. PubMed ID: 37051600
    [TBL] [Abstract][Full Text] [Related]  

  • 24. From SARS-CoV-2 to Global Preparedness: A Graphical Interface for Standardised High-Throughput Bioinformatics Analysis in Pandemic Scenarios and Surveillance of Drug Resistance.
    Cumlin T; Karlsson I; Haars J; Rosengren M; Lennerstrand J; Pimushyna M; Feuk L; Ladenvall C; Kaden R
    Int J Mol Sci; 2024 Jun; 25(12):. PubMed ID: 38928350
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism.
    Moore SC; Penrice-Randal R; Alruwaili M; Randle N; Armstrong S; Hartley C; Haldenby S; Dong X; Alrezaihi A; Almsaud M; Bentley E; Clark J; García-Dorival I; Gilmore P; Han X; Jones B; Luu L; Sharma P; Shawli G; Sun Y; Zhao Q; Pullan ST; Carter DP; Bewley K; Dunning J; Zhou EM; Solomon T; Beadsworth M; Cruise J; Crook DW; Matthews DA; Davidson AD; Mahmood Z; Aljabr W; Druce J; Vipond R; Ng L; Renia L; Openshaw PJM; Baillie JK; Carroll MW; Stewart J; Darby A; Semple M; Turtle L; Hiscox JA
    Viruses; 2020 Oct; 12(10):. PubMed ID: 33066701
    [TBL] [Abstract][Full Text] [Related]  

  • 26. High temporal resolution Nanopore sequencing dataset of SARS-CoV-2 and host cell RNAs.
    Tombácz D; Dörmő Á; Gulyás G; Csabai Z; Prazsák I; Kakuk B; Harangozó Á; Jankovics I; Dénes B; Boldogkői Z
    Gigascience; 2022 Oct; 11():. PubMed ID: 36251275
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Whole-genome Sequencing of SARS-CoV-2: Using Phylogeny and Structural Modeling to Contextualize Local Viral Evolution.
    Nazario-Toole AE; Xia H; Gibbons TF
    Mil Med; 2022 Jan; 187(1-2):e130-e137. PubMed ID: 33609027
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Evaluation of NGS-based approaches for SARS-CoV-2 whole genome characterisation.
    Charre C; Ginevra C; Sabatier M; Regue H; Destras G; Brun S; Burfin G; Scholtes C; Morfin F; Valette M; Lina B; Bal A; Josset L
    Virus Evol; 2020 Jul; 6(2):veaa075. PubMed ID: 33318859
    [TBL] [Abstract][Full Text] [Related]  

  • 29. InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses.
    Ferguson JM; Gamaarachchi H; Nguyen T; Gollon A; Tong S; Aquilina-Reid C; Bowen-James R; Deveson IW
    Bioinformatics; 2022 Feb; 38(5):1443-1446. PubMed ID: 34908106
    [TBL] [Abstract][Full Text] [Related]  

  • 30. MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction.
    Murigneux V; Roberts LW; Forde BM; Phan MD; Nhu NTK; Irwin AD; Harris PNA; Paterson DL; Schembri MA; Whiley DM; Beatson SA
    BMC Genomics; 2021 Jun; 22(1):474. PubMed ID: 34172000
    [TBL] [Abstract][Full Text] [Related]  

  • 31. STArS (STrain-Amplicon-Seq), a targeted nanopore sequencing workflow for SARS-CoV-2 diagnostics and genotyping.
    Maestri S; Grosso V; Alfano M; Lavezzari D; Piubelli C; Bisoffi Z; Rossato M; Delledonne M
    Biol Methods Protoc; 2022; 7(1):bpac020. PubMed ID: 36046362
    [TBL] [Abstract][Full Text] [Related]  

  • 32. ONTdeCIPHER: an amplicon-based nanopore sequencing pipeline for tracking pathogen variants.
    Cherif E; Thiam FS; Salma M; Rivera-Ingraham G; Justy F; Deremarque T; Breugnot D; Doudou JC; Gozlan RE; Combe M
    Bioinformatics; 2022 Mar; 38(7):2033-2035. PubMed ID: 35080622
    [TBL] [Abstract][Full Text] [Related]  

  • 33. A Comparison of Whole Genome Sequencing of SARS-CoV-2 Using Amplicon-Based Sequencing, Random Hexamers, and Bait Capture.
    Nasir JA; Kozak RA; Aftanas P; Raphenya AR; Smith KM; Maguire F; Maan H; Alruwaili M; Banerjee A; Mbareche H; Alcock BP; Knox NC; Mossman K; Wang B; Hiscox JA; McArthur AG; Mubareka S
    Viruses; 2020 Aug; 12(8):. PubMed ID: 32824272
    [TBL] [Abstract][Full Text] [Related]  

  • 34. NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy.
    de Koning W; Miladi M; Hiltemann S; Heikema A; Hays JP; Flemming S; van den Beek M; Mustafa DA; Backofen R; Grüning B; Stubbs AP
    Gigascience; 2020 Oct; 9(10):. PubMed ID: 33068114
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Sequencing of SARS-CoV-2 genome using different nanopore chemistries.
    González-Recio O; Gutiérrez-Rivas M; Peiró-Pastor R; Aguilera-Sepúlveda P; Cano-Gómez C; Jiménez-Clavero MÁ; Fernández-Pinero J
    Appl Microbiol Biotechnol; 2021 Apr; 105(8):3225-3234. PubMed ID: 33792750
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Towards increased accuracy and reproducibility in SARS-CoV-2 next generation sequence analysis for public health surveillance.
    Connor R; Yarmosh DA; Maier W; Shakya M; Martin R; Bradford R; Brister JR; Chain PS; Copeland CA; di Iulio J; Hu B; Ebert P; Gunti J; Jin Y; Katz KS; Kochergin A; LaRosa T; Li J; Li PE; Lo CC; Rashid S; Maiorova ES; Xiao C; Zalunin V; Pruitt KD
    bioRxiv; 2022 Nov; ():. PubMed ID: 36380755
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Improvements to the ARTIC multiplex PCR method for SARS-CoV-2 genome sequencing using nanopore.
    Tyson JR; James P; Stoddart D; Sparks N; Wickenhagen A; Hall G; Choi JH; Lapointe H; Kamelian K; Smith AD; Prystajecky N; Goodfellow I; Wilson SJ; Harrigan R; Snutch TP; Loman NJ; Quick J
    bioRxiv; 2020 Sep; ():. PubMed ID: 32908977
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Sequencing SARS-CoV-2 Genomes from Saliva.
    Alpert T; Vogels CBF; Breban MI; Petrone ME; ; Wyllie AL; Grubaugh ND; Fauver JR
    medRxiv; 2021 Jun; ():. PubMed ID: 34230934
    [TBL] [Abstract][Full Text] [Related]  

  • 39. NanoCoV19: An analytical pipeline for rapid detection of severe acute respiratory syndrome coronavirus 2.
    Lang J
    Front Genet; 2022; 13():1008792. PubMed ID: 36186464
    [TBL] [Abstract][Full Text] [Related]  

  • 40. SARS-CoV-2 complete genome sequencing from the Italian Campania region using a highly automated next generation sequencing system.
    Rachiglio AM; De Sabato L; Roma C; Cennamo M; Fiorenza M; Terracciano D; Pasquale R; Bergantino F; Cavalcanti E; Botti G; Vaccari G; Portella G; Normanno N
    J Transl Med; 2021 Jun; 19(1):246. PubMed ID: 34090468
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.