273 related articles for article (PubMed ID: 34408075)
1. Genomic structural variants constrain and facilitate adaptation in natural populations of
Hämälä T; Wafula EK; Guiltinan MJ; Ralph PE; dePamphilis CW; Tiffin P
Proc Natl Acad Sci U S A; 2021 Aug; 118(35):. PubMed ID: 34408075
[TBL] [Abstract][Full Text] [Related]
2. Gene Expression Modularity Reveals Footprints of Polygenic Adaptation in Theobroma cacao.
Hämälä T; Guiltinan MJ; Marden JH; Maximova SN; dePamphilis CW; Tiffin P
Mol Biol Evol; 2020 Jan; 37(1):110-123. PubMed ID: 31501906
[TBL] [Abstract][Full Text] [Related]
3. Environment and pathogens shape local and regional adaptations to climate change in the chocolate tree, Theobroma cacao L.
Nelson JT; Motamayor JC; Cornejo OE
Mol Ecol; 2021 Feb; 30(3):656-669. PubMed ID: 33247971
[TBL] [Abstract][Full Text] [Related]
4. The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies.
Argout X; Martin G; Droc G; Fouet O; Labadie K; Rivals E; Aury JM; Lanaud C
BMC Genomics; 2017 Sep; 18(1):730. PubMed ID: 28915793
[TBL] [Abstract][Full Text] [Related]
5. Exploring the role of polymorphic interspecies structural variants in reproductive isolation and adaptive divergence in Eucalyptus.
Ferguson S; Jones A; Murray K; Andrew RL; Schwessinger B; Bothwell H; Borevitz J
Gigascience; 2024 Jan; 13():. PubMed ID: 38869149
[TBL] [Abstract][Full Text] [Related]
6. The genome of Theobroma cacao.
Argout X; Salse J; Aury JM; Guiltinan MJ; Droc G; Gouzy J; Allegre M; Chaparro C; Legavre T; Maximova SN; Abrouk M; Murat F; Fouet O; Poulain J; Ruiz M; Roguet Y; Rodier-Goud M; Barbosa-Neto JF; Sabot F; Kudrna D; Ammiraju JS; Schuster SC; Carlson JE; Sallet E; Schiex T; Dievart A; Kramer M; Gelley L; Shi Z; Bérard A; Viot C; Boccara M; Risterucci AM; Guignon V; Sabau X; Axtell MJ; Ma Z; Zhang Y; Brown S; Bourge M; Golser W; Song X; Clement D; Rivallan R; Tahi M; Akaza JM; Pitollat B; Gramacho K; D'Hont A; Brunel D; Infante D; Kebe I; Costet P; Wing R; McCombie WR; Guiderdoni E; Quetier F; Panaud O; Wincker P; Bocs S; Lanaud C
Nat Genet; 2011 Feb; 43(2):101-8. PubMed ID: 21186351
[TBL] [Abstract][Full Text] [Related]
7. ARG-based genome-wide analysis of cacao cultivars.
Utro F; Cornejo OE; Livingstone D; Motamayor JC; Parida L
BMC Bioinformatics; 2012; 13 Suppl 19(Suppl 19):S17. PubMed ID: 23281769
[TBL] [Abstract][Full Text] [Related]
8. A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6.
Saski CA; Feltus FA; Staton ME; Blackmon BP; Ficklin SP; Kuhn DN; Schnell RJ; Shapiro H; Motamayor JC
BMC Genomics; 2011 Aug; 12():413. PubMed ID: 21846342
[TBL] [Abstract][Full Text] [Related]
9. Lost genome segments associate with trait diversity during rice domestication.
Zheng X; Zhong L; Pang H; Wen S; Li F; Lou D; Ge J; Fan W; Wang T; Han Z; Qiao W; Pan X; Zhu Y; Wang J; Tang C; Wang X; Zhang J; Xu Z; Kim SR; Kohli A; Ye G; Olsen KM; Fang W; Yang Q
BMC Biol; 2023 Feb; 21(1):20. PubMed ID: 36726089
[TBL] [Abstract][Full Text] [Related]
10. Three de novo assembled wild cacao genomes from the Upper Amazon.
Nousias O; Zheng J; Li T; Meinhardt LW; Bailey B; Gutierrez O; Baruah IK; Cohen SP; Zhang D; Yin Y
Sci Data; 2024 Apr; 11(1):369. PubMed ID: 38605066
[TBL] [Abstract][Full Text] [Related]
11. Geographic distribution and adaptive significance of genomic structural variants: an anthropological genetics perspective.
Eaaswarkhanth M; Pavlidis P; Gokcumen O
Hum Biol; 2014; 86(4):260-75. PubMed ID: 25959693
[TBL] [Abstract][Full Text] [Related]
12. Genome-wide analysis reveals divergent patterns of gene expression during zygotic and somatic embryo maturation of Theobroma cacao L., the chocolate tree.
Maximova SN; Florez S; Shen X; Niemenak N; Zhang Y; Curtis W; Guiltinan MJ
BMC Plant Biol; 2014 Jul; 14():185. PubMed ID: 25030026
[TBL] [Abstract][Full Text] [Related]
13. Adding value to cocoa (Theobroma cacao L.) germplasm information with domestication history and admixture mapping.
Marcano M; Pugh T; Cros E; Morales S; Portillo Páez EA; Courtois B; Glaszmann JC; Engels JM; Phillips W; Astorga C; Risterucci AM; Fouet O; González V; Rosenberg K; Vallat I; Dagert M; Lanaud C
Theor Appl Genet; 2007 Mar; 114(5):877-84. PubMed ID: 17252253
[TBL] [Abstract][Full Text] [Related]
14. Genetic differentiation and intrinsic genomic features explain variation in recombination hotspots among cocoa tree populations.
Schwarzkopf EJ; Motamayor JC; Cornejo OE
BMC Genomics; 2020 Apr; 21(1):332. PubMed ID: 32349675
[TBL] [Abstract][Full Text] [Related]
15. Making a chocolate chip: development and evaluation of a 6K SNP array for Theobroma cacao.
Livingstone D; Royaert S; Stack C; Mockaitis K; May G; Farmer A; Saski C; Schnell R; Kuhn D; Motamayor JC
DNA Res; 2015 Aug; 22(4):279-91. PubMed ID: 26070980
[TBL] [Abstract][Full Text] [Related]
16. Genome size, cytogenetic data and transferability of EST-SSRs markers in wild and cultivated species of the genus Theobroma L. (Byttnerioideae, Malvaceae).
da Silva RA; Souza G; Lemos LS; Lopes UV; Patrocínio NG; Alves RM; Marcellino LH; Clement D; Micheli F; Gramacho KP
PLoS One; 2017; 12(2):e0170799. PubMed ID: 28187131
[TBL] [Abstract][Full Text] [Related]
17. Using structural variants to understand the ecological and evolutionary dynamics of fungal plant pathogens.
Hartmann FE
New Phytol; 2022 Apr; 234(1):43-49. PubMed ID: 34873717
[TBL] [Abstract][Full Text] [Related]
18. Genome-Wide Association Study Reveals Novel Candidate Genes Associated with Productivity and Disease Resistance to
Osorio-Guarín JA; Berdugo-Cely JA; Coronado-Silva RA; Baez E; Jaimes Y; Yockteng R
G3 (Bethesda); 2020 May; 10(5):1713-1725. PubMed ID: 32169867
[TBL] [Abstract][Full Text] [Related]
19. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
Motamayor JC; Mockaitis K; Schmutz J; Haiminen N; Livingstone D; Cornejo O; Findley SD; Zheng P; Utro F; Royaert S; Saski C; Jenkins J; Podicheti R; Zhao M; Scheffler BE; Stack JC; Feltus FA; Mustiga GM; Amores F; Phillips W; Marelli JP; May GD; Shapiro H; Ma J; Bustamante CD; Schnell RJ; Main D; Gilbert D; Parida L; Kuhn DN
Genome Biol; 2013 Jun; 14(6):r53. PubMed ID: 23731509
[TBL] [Abstract][Full Text] [Related]
20. Structural genomic variation and migratory behavior in a wild songbird.
Delmore KE; Van Doren BM; Ullrich K; Curk T; van der Jeugd HP; Liedvogel M
Evol Lett; 2023 Dec; 7(6):401-412. PubMed ID: 38045725
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]