These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

114 related articles for article (PubMed ID: 34415836)

  • 1. An FPGA Based Energy-Efficient Read Mapper With Parallel Filtering and In-Situ Verification.
    Gudur VY; Maheshwari S; Acharyya A; Shafik R
    IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(5):2697-2711. PubMed ID: 34415836
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Hardware-Algorithm Codesign for Fast and Energy Efficient Approximate String Matching on FPGA for Computational Biology.
    Gudur VY; Maheshwari S; Bhardwaj S; Acharyya A; Shafik R
    Annu Int Conf IEEE Eng Med Biol Soc; 2022 Jul; 2022():87-90. PubMed ID: 36086088
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping.
    Alser M; Hassan H; Xin H; Ergin O; Mutlu O; Alkan C
    Bioinformatics; 2017 Nov; 33(21):3355-3363. PubMed ID: 28575161
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies.
    Kim JS; Senol Cali D; Xin H; Lee D; Ghose S; Alser M; Hassan H; Ergin O; Alkan C; Mutlu O
    BMC Genomics; 2018 May; 19(Suppl 2):89. PubMed ID: 29764378
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A hybrid short read mapping accelerator.
    Chen Y; Schmidt B; Maskell DL
    BMC Bioinformatics; 2013 Feb; 14():67. PubMed ID: 23441908
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Shouji: a fast and efficient pre-alignment filter for sequence alignment.
    Alser M; Hassan H; Kumar A; Mutlu O; Alkan C
    Bioinformatics; 2019 Nov; 35(21):4255-4263. PubMed ID: 30923804
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Efficient real-time selective genome sequencing on resource-constrained devices.
    Shih PJ; Saadat H; Parameswaran S; Gamaarachchi H
    Gigascience; 2022 Dec; 12():. PubMed ID: 37395631
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CORAL: Verification-Aware OpenCL Based Read Mapper for Heterogeneous Systems.
    Maheshwari S; Gudur VY; Shafik R; Wilson I; Yakovlev A; Acharyya A
    IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(4):1426-1438. PubMed ID: 31562102
    [TBL] [Abstract][Full Text] [Related]  

  • 9. GenSeq+: A Scalable High-Performance Accelerator for Genome Sequencing.
    Wang C; Gong L; Lei S; Fang H; Li X; Wang A; Zhou X
    IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(4):1512-1523. PubMed ID: 31613776
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Real-Time Energy Efficient Hand Pose Estimation: A Case Study.
    Al Koutayni MR; Rybalkin V; Malik J; Elhayek A; Weis C; Reis G; Wehn N; Stricker D
    Sensors (Basel); 2020 May; 20(10):. PubMed ID: 32429341
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Fast and efficient short read mapping based on a succinct hash index.
    Zhang H; Chan Y; Fan K; Schmidt B; Liu W
    BMC Bioinformatics; 2018 Mar; 19(1):92. PubMed ID: 29523083
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Accelerating the Next Generation Long Read Mapping with the FPGA-Based System.
    Chen P; Wang C; Li X; Zhou X
    IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(5):840-52. PubMed ID: 26356857
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping.
    Xin H; Greth J; Emmons J; Pekhimenko G; Kingsford C; Alkan C; Mutlu O
    Bioinformatics; 2015 May; 31(10):1553-60. PubMed ID: 25577434
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Ψ-RA: a parallel sparse index for genomic read alignment.
    Oğuzhan Külekci M; Hon WK; Shah R; Scott Vitter J; Xu B
    BMC Genomics; 2011; 12 Suppl 2(Suppl 2):S7. PubMed ID: 21989248
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GRASPm: an efficient algorithm for exact pattern-matching in genomic sequences.
    Deusdado S; Carvalho P
    Int J Bioinform Res Appl; 2009; 5(4):385-401. PubMed ID: 19640827
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The GEM mapper: fast, accurate and versatile alignment by filtration.
    Marco-Sola S; Sammeth M; Guigó R; Ribeca P
    Nat Methods; 2012 Dec; 9(12):1185-8. PubMed ID: 23103880
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Heterogeneous Cloud Framework for Big Data Genome Sequencing.
    Wang C; Li X; Chen P; Wang A; Zhou X; Yu H
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(1):166-78. PubMed ID: 26357087
    [TBL] [Abstract][Full Text] [Related]  

  • 18. BitMapper: an efficient all-mapper based on bit-vector computing.
    Cheng H; Jiang H; Yang J; Xu Y; Shang Y
    BMC Bioinformatics; 2015 Jun; 16():192. PubMed ID: 26063651
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A bit-parallel dynamic programming algorithm suitable for DNA sequence alignment.
    Kimura K; Koike A; Nakai K
    J Bioinform Comput Biol; 2012 Aug; 10(4):1250002. PubMed ID: 22809415
    [TBL] [Abstract][Full Text] [Related]  

  • 20. FastEtch: A Fast Sketch-Based Assembler for Genomes.
    Ghosh P; Kalyanaraman A
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1091-1106. PubMed ID: 28910776
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.