203 related articles for article (PubMed ID: 34417209)
1. Mutational bias in spermatogonia impacts the anatomy of regulatory sites in the human genome.
Kaiser VB; Talmane L; Kumar Y; Semple F; MacLennan M; ; FitzPatrick DR; Taylor MS; Semple CA
Genome Res; 2021 Nov; 31(11):1994-2007. PubMed ID: 34417209
[TBL] [Abstract][Full Text] [Related]
2. Chromatin loop anchors are associated with genome instability in cancer and recombination hotspots in the germline.
Kaiser VB; Semple CA
Genome Biol; 2018 Jul; 19(1):101. PubMed ID: 30060743
[TBL] [Abstract][Full Text] [Related]
3. Aberrant
Houle AA; Gibling H; Lamaze FC; Edgington HA; Soave D; Fave MJ; Agbessi M; Bruat V; Stein LD; Awadalla P
Genome Res; 2018 Nov; 28(11):1611-1620. PubMed ID: 30341163
[TBL] [Abstract][Full Text] [Related]
4. Discovering unknown human and mouse transcription factor binding sites and their characteristics from ChIP-seq data.
Yu CP; Kuo CH; Nelson CW; Chen CA; Soh ZT; Lin JJ; Hsiao RX; Chang CY; Li WH
Proc Natl Acad Sci U S A; 2021 May; 118(20):. PubMed ID: 33975951
[TBL] [Abstract][Full Text] [Related]
5. Rare genetic variation at transcription factor binding sites modulates local DNA methylation profiles.
Martin-Trujillo A; Patel N; Richter F; Jadhav B; Garg P; Morton SU; McKean DM; DePalma SR; Goldmuntz E; Gruber D; Kim R; Newburger JW; Porter GA; Giardini A; Bernstein D; Tristani-Firouzi M; Seidman JG; Seidman CE; Chung WK; Gelb BD; Sharp AJ
PLoS Genet; 2020 Nov; 16(11):e1009189. PubMed ID: 33216750
[TBL] [Abstract][Full Text] [Related]
6. A probabilistic approach to learn chromatin architecture and accurate inference of the NF-κB/RelA regulatory network using ChIP-Seq.
Yang J; Mitra A; Dojer N; Fu S; Rowicka M; Brasier AR
Nucleic Acids Res; 2013 Aug; 41(15):7240-59. PubMed ID: 23771139
[TBL] [Abstract][Full Text] [Related]
7. PRDM9 variation strongly influences recombination hot-spot activity and meiotic instability in humans.
Berg IL; Neumann R; Lam KW; Sarbajna S; Odenthal-Hesse L; May CA; Jeffreys AJ
Nat Genet; 2010 Oct; 42(10):859-63. PubMed ID: 20818382
[TBL] [Abstract][Full Text] [Related]
8. Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite.
Wang X; Zhang X
BMC Syst Biol; 2011; 5 Suppl 2(Suppl 2):S3. PubMed ID: 22784574
[TBL] [Abstract][Full Text] [Related]
9. The patterns of histone modifications in the vicinity of transcription factor binding sites in human lymphoblastoid cell lines.
Nie Y; Liu H; Sun X
PLoS One; 2013; 8(3):e60002. PubMed ID: 23527292
[TBL] [Abstract][Full Text] [Related]
10. TAMC: A deep-learning approach to predict motif-centric transcriptional factor binding activity based on ATAC-seq profile.
Yang T; Henao R
PLoS Comput Biol; 2022 Sep; 18(9):e1009921. PubMed ID: 36094959
[TBL] [Abstract][Full Text] [Related]
11. PRDM9 is a major determinant of meiotic recombination hotspots in humans and mice.
Baudat F; Buard J; Grey C; Fledel-Alon A; Ober C; Przeworski M; Coop G; de Massy B
Science; 2010 Feb; 327(5967):836-40. PubMed ID: 20044539
[TBL] [Abstract][Full Text] [Related]
12. ZCWPW1 is recruited to recombination hotspots by PRDM9 and is essential for meiotic double strand break repair.
Wells D; Bitoun E; Moralli D; Zhang G; Hinch A; Jankowska J; Donnelly P; Green C; Myers SR
Elife; 2020 Aug; 9():. PubMed ID: 32744506
[TBL] [Abstract][Full Text] [Related]
13. Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichment.
Worsley Hunt R; Mathelier A; Del Peso L; Wasserman WW
BMC Genomics; 2014 Jun; 15(1):472. PubMed ID: 24927817
[TBL] [Abstract][Full Text] [Related]
14. Re-engineering the zinc fingers of PRDM9 reverses hybrid sterility in mice.
Davies B; Hatton E; Altemose N; Hussin JG; Pratto F; Zhang G; Hinch AG; Moralli D; Biggs D; Diaz R; Preece C; Li R; Bitoun E; Brick K; Green CM; Camerini-Otero RD; Myers SR; Donnelly P
Nature; 2016 Feb; 530(7589):171-176. PubMed ID: 26840484
[TBL] [Abstract][Full Text] [Related]
15. PRDM9 activity depends on HELLS and promotes local 5-hydroxymethylcytosine enrichment.
Imai Y; Biot M; Clément JA; Teragaki M; Urbach S; Robert T; Baudat F; Grey C; de Massy B
Elife; 2020 Oct; 9():. PubMed ID: 33047671
[TBL] [Abstract][Full Text] [Related]
16. Fine mapping of meiotic NAHR-associated crossovers causing large NF1 deletions.
Hillmer M; Wagner D; Summerer A; Daiber M; Mautner VF; Messiaen L; Cooper DN; Kehrer-Sawatzki H
Hum Mol Genet; 2016 Feb; 25(3):484-96. PubMed ID: 26614388
[TBL] [Abstract][Full Text] [Related]
17. Genomic and chromatin features shaping meiotic double-strand break formation and repair in mice.
Yamada S; Kim S; Tischfield SE; Jasin M; Lange J; Keeney S
Cell Cycle; 2017 Oct; 16(20):1870-1884. PubMed ID: 28820351
[TBL] [Abstract][Full Text] [Related]
18. An integrative analysis of TFBS-clustered regions reveals new transcriptional regulation models on the accessible chromatin landscape.
Chen H; Li H; Liu F; Zheng X; Wang S; Bo X; Shu W
Sci Rep; 2015 Feb; 5():8465. PubMed ID: 25682954
[TBL] [Abstract][Full Text] [Related]
19. PRDM9 drives evolutionary erosion of hotspots in Mus musculus through haplotype-specific initiation of meiotic recombination.
Baker CL; Kajita S; Walker M; Saxl RL; Raghupathy N; Choi K; Petkov PM; Paigen K
PLoS Genet; 2015 Jan; 11(1):e1004916. PubMed ID: 25568937
[TBL] [Abstract][Full Text] [Related]
20. Multimer Formation Explains Allelic Suppression of PRDM9 Recombination Hotspots.
Baker CL; Petkova P; Walker M; Flachs P; Mihola O; Trachtulec Z; Petkov PM; Paigen K
PLoS Genet; 2015 Sep; 11(9):e1005512. PubMed ID: 26368021
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]