155 related articles for article (PubMed ID: 34429136)
1. Small-scale sequencing enables quality assessment of Ribo-Seq data: an example from Arabidopsis cell culture.
Mahboubi A; Delhomme N; Häggström S; Hanson J
Plant Methods; 2021 Aug; 17(1):92. PubMed ID: 34429136
[TBL] [Abstract][Full Text] [Related]
2. A custom library construction method for super-resolution ribosome profiling in Arabidopsis.
Wu HL; Hsu PY
Plant Methods; 2022 Oct; 18(1):115. PubMed ID: 36195920
[TBL] [Abstract][Full Text] [Related]
3. RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data.
Perkins P; Mazzoni-Putman S; Stepanova A; Alonso J; Heber S
BMC Genomics; 2019 Jun; 20(Suppl 5):422. PubMed ID: 31167636
[TBL] [Abstract][Full Text] [Related]
4. HRPDviewer: human ribosome profiling data viewer.
Wu WS; Jiang YX; Chang JW; Chu YH; Chiu YH; Tsao YH; Nordling TEM; Tseng YY; Tseng JT
Database (Oxford); 2018 Jan; 2018():. PubMed ID: 30010738
[TBL] [Abstract][Full Text] [Related]
5. RiboToolkit: an integrated platform for analysis and annotation of ribosome profiling data to decode mRNA translation at codon resolution.
Liu Q; Shvarts T; Sliz P; Gregory RI
Nucleic Acids Res; 2020 Jul; 48(W1):W218-W229. PubMed ID: 32427338
[TBL] [Abstract][Full Text] [Related]
6. Structured RNA Contaminants in Bacterial Ribo-Seq.
Fremin BJ; Bhatt AS
mSphere; 2020 Oct; 5(5):. PubMed ID: 33087519
[TBL] [Abstract][Full Text] [Related]
7. Studying Selenoprotein mRNA Translation Using RNA-Seq and Ribosome Profiling.
Dalley BK; Baird L; Howard MT
Methods Mol Biol; 2018; 1661():103-123. PubMed ID: 28917040
[TBL] [Abstract][Full Text] [Related]
8. Recommendations for bacterial ribosome profiling experiments based on bioinformatic evaluation of published data.
Glaub A; Huptas C; Neuhaus K; Ardern Z
J Biol Chem; 2020 Jul; 295(27):8999-9011. PubMed ID: 32385111
[TBL] [Abstract][Full Text] [Related]
9. Poly-A Tailing and Adaptor Ligation Methods for Ribo-Seq Library Construction.
Qiu J; Qian SB
Methods Mol Biol; 2021; 2252():221-237. PubMed ID: 33765278
[TBL] [Abstract][Full Text] [Related]
10. STATR: A simple analysis pipeline of Ribo-Seq in bacteria.
Choe D; Palsson B; Cho BK
J Microbiol; 2020 Mar; 58(3):217-226. PubMed ID: 31989542
[TBL] [Abstract][Full Text] [Related]
11. RIBO-seq in Bacteria: a Sample Collection and Library Preparation Protocol for NGS Sequencing.
Kopik N; Chrobak O; Latoch P; Kovalenko M; Starosta AL
J Vis Exp; 2021 Aug; (174):. PubMed ID: 34424233
[TBL] [Abstract][Full Text] [Related]
12. RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data.
Michel AM; Mullan JP; Velayudhan V; O'Connor PB; Donohue CA; Baranov PV
RNA Biol; 2016; 13(3):316-9. PubMed ID: 26821742
[TBL] [Abstract][Full Text] [Related]
13. Ribo-ODDR: oligo design pipeline for experiment-specific rRNA depletion in Ribo-seq.
Alkan F; Silva J; Pintó Barberà E; Faller WJ
Bioinformatics; 2021 Sep; 37(17):2659-2667. PubMed ID: 33720291
[TBL] [Abstract][Full Text] [Related]
14. Normalized Ribo-Seq for Quantifying Absolute Global and Specific Changes in Translation.
Hoerth K; Reitter S; Schott J
Bio Protoc; 2022 Feb; 12(4):e4323. PubMed ID: 35340296
[TBL] [Abstract][Full Text] [Related]
15. Comparison of software packages for detecting unannotated translated small open reading frames by Ribo-seq.
Tong G; Hah N; Martinez TF
Brief Bioinform; 2024 May; 25(4):. PubMed ID: 38842510
[TBL] [Abstract][Full Text] [Related]
16. A Ribo-Seq Method to Study Genome-Wide Translational Regulation in Plants.
Chen H; Alonso JM; Stepanova AN
Methods Mol Biol; 2022; 2494():61-98. PubMed ID: 35467201
[TBL] [Abstract][Full Text] [Related]
17. RiboPlotR: a visualization tool for periodic Ribo-seq reads.
Wu HL; Hsu PY
Plant Methods; 2021 Dec; 17(1):124. PubMed ID: 34876166
[TBL] [Abstract][Full Text] [Related]
18. RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing.
Popa A; Lebrigand K; Paquet A; Nottet N; Robbe-Sermesant K; Waldmann R; Barbry P
F1000Res; 2016; 5():1309. PubMed ID: 27347386
[TBL] [Abstract][Full Text] [Related]
19. Estimation of ribosome profiling performance and reproducibility at various levels of resolution.
Diament A; Tuller T
Biol Direct; 2016 May; 11():24. PubMed ID: 27160013
[TBL] [Abstract][Full Text] [Related]
20. DeepShape: estimating isoform-level ribosome abundance and distribution with Ribo-seq data.
Cui H; Hu H; Zeng J; Chen T
BMC Bioinformatics; 2019 Dec; 20(Suppl 24):678. PubMed ID: 31861979
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]