These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

291 related articles for article (PubMed ID: 34445537)

  • 41. When homologous sequences meet structural decoys: Accurate contact prediction by tFold in CASP14-(tFold for CASP14 contact prediction).
    Shen T; Wu J; Lan H; Zheng L; Pei J; Wang S; Liu W; Huang J
    Proteins; 2021 Dec; 89(12):1901-1910. PubMed ID: 34473376
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Use of a structural alphabet for analysis of short loops connecting repetitive structures.
    Fourrier L; Benros C; de Brevern AG
    BMC Bioinformatics; 2004 May; 5():58. PubMed ID: 15140270
    [TBL] [Abstract][Full Text] [Related]  

  • 43. Local structure prediction with local structure-based sequence profiles.
    Yang AS; Wang LY
    Bioinformatics; 2003 Jul; 19(10):1267-74. PubMed ID: 12835271
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Toward an accurate prediction of inter-residue distances in proteins using 2D recursive neural networks.
    Kukic P; Mirabello C; Tradigo G; Walsh I; Veltri P; Pollastri G
    BMC Bioinformatics; 2014 Jan; 15():6. PubMed ID: 24410833
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Improving protein fold recognition with hybrid profiles combining sequence and structure evolution.
    Ghouzam Y; Postic G; de Brevern AG; Gelly JC
    Bioinformatics; 2015 Dec; 31(23):3782-9. PubMed ID: 26254434
    [TBL] [Abstract][Full Text] [Related]  

  • 46. RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning.
    Gao Y; Wang S; Deng M; Xu J
    BMC Bioinformatics; 2018 May; 19(Suppl 4):100. PubMed ID: 29745828
    [TBL] [Abstract][Full Text] [Related]  

  • 47. iPBA: a tool for protein structure comparison using sequence alignment strategies.
    Gelly JC; Joseph AP; Srinivasan N; de Brevern AG
    Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W18-23. PubMed ID: 21586582
    [TBL] [Abstract][Full Text] [Related]  

  • 48. IGPRED: Combination of convolutional neural and graph convolutional networks for protein secondary structure prediction.
    Görmez Y; Sabzekar M; Aydın Z
    Proteins; 2021 Oct; 89(10):1277-1288. PubMed ID: 33993559
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Predicting protein-ligand binding residues with deep convolutional neural networks.
    Cui Y; Dong Q; Hong D; Wang X
    BMC Bioinformatics; 2019 Feb; 20(1):93. PubMed ID: 30808287
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Fast and Flexible Protein Design Using Deep Graph Neural Networks.
    Strokach A; Becerra D; Corbi-Verge C; Perez-Riba A; Kim PM
    Cell Syst; 2020 Oct; 11(4):402-411.e4. PubMed ID: 32971019
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Evaluation of Deep Neural Network ProSPr for Accurate Protein Distance Predictions on CASP14 Targets.
    Stern J; Hedelius B; Fisher O; Billings WM; Della Corte D
    Int J Mol Sci; 2021 Nov; 22(23):. PubMed ID: 34884640
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Prelude and Fugue, predicting local protein structure, early folding regions and structural weaknesses.
    Kwasigroch JM; Rooman M
    Bioinformatics; 2006 Jul; 22(14):1800-2. PubMed ID: 16682423
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Improved protein structure prediction using predicted interresidue orientations.
    Yang J; Anishchenko I; Park H; Peng Z; Ovchinnikov S; Baker D
    Proc Natl Acad Sci U S A; 2020 Jan; 117(3):1496-1503. PubMed ID: 31896580
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Highly accurate protein structure prediction with AlphaFold.
    Jumper J; Evans R; Pritzel A; Green T; Figurnov M; Ronneberger O; Tunyasuvunakool K; Bates R; Žídek A; Potapenko A; Bridgland A; Meyer C; Kohl SAA; Ballard AJ; Cowie A; Romera-Paredes B; Nikolov S; Jain R; Adler J; Back T; Petersen S; Reiman D; Clancy E; Zielinski M; Steinegger M; Pacholska M; Berghammer T; Bodenstein S; Silver D; Vinyals O; Senior AW; Kavukcuoglu K; Kohli P; Hassabis D
    Nature; 2021 Aug; 596(7873):583-589. PubMed ID: 34265844
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Protein secondary structure prediction using modular reciprocal bidirectional recurrent neural networks.
    Babaei S; Geranmayeh A; Seyyedsalehi SA
    Comput Methods Programs Biomed; 2010 Dec; 100(3):237-47. PubMed ID: 20472322
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Fully automated ab initio protein structure prediction using I-SITES, HMMSTR and ROSETTA.
    Bystroff C; Shao Y
    Bioinformatics; 2002; 18 Suppl 1():S54-61. PubMed ID: 12169531
    [TBL] [Abstract][Full Text] [Related]  

  • 57. A structural alphabet for local protein structures: improved prediction methods.
    Etchebest C; Benros C; Hazout S; de Brevern AG
    Proteins; 2005 Jun; 59(4):810-27. PubMed ID: 15822101
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Protein oligomer modeling guided by predicted interchain contacts in CASP14.
    Baek M; Anishchenko I; Park H; Humphreys IR; Baker D
    Proteins; 2021 Dec; 89(12):1824-1833. PubMed ID: 34324224
    [TBL] [Abstract][Full Text] [Related]  

  • 59. PaleAle 5.0: prediction of protein relative solvent accessibility by deep learning.
    Kaleel M; Torrisi M; Mooney C; Pollastri G
    Amino Acids; 2019 Sep; 51(9):1289-1296. PubMed ID: 31388850
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Accurate prediction of protein structures and interactions using a three-track neural network.
    Baek M; DiMaio F; Anishchenko I; Dauparas J; Ovchinnikov S; Lee GR; Wang J; Cong Q; Kinch LN; Schaeffer RD; Millán C; Park H; Adams C; Glassman CR; DeGiovanni A; Pereira JH; Rodrigues AV; van Dijk AA; Ebrecht AC; Opperman DJ; Sagmeister T; Buhlheller C; Pavkov-Keller T; Rathinaswamy MK; Dalwadi U; Yip CK; Burke JE; Garcia KC; Grishin NV; Adams PD; Read RJ; Baker D
    Science; 2021 Aug; 373(6557):871-876. PubMed ID: 34282049
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 15.