292 related articles for article (PubMed ID: 34445785)
1. Modeling and Structure Determination of Homo-Oligomeric Proteins: An Overview of Challenges and Current Approaches.
Gaber A; Pavšič M
Int J Mol Sci; 2021 Aug; 22(16):. PubMed ID: 34445785
[TBL] [Abstract][Full Text] [Related]
2. A graphical method for analyzing distance restraints using residual dipolar couplings for structure determination of symmetric protein homo-oligomers.
Martin JW; Yan AK; Bailey-Kellogg C; Zhou P; Donald BR
Protein Sci; 2011 Jun; 20(6):970-85. PubMed ID: 21413097
[TBL] [Abstract][Full Text] [Related]
3. Proper evaluation of chemical cross-linking-based spatial restraints improves the precision of modeling homo-oligomeric protein complexes.
Gaber A; Gunčar G; Pavšič M
BMC Bioinformatics; 2019 Sep; 20(1):464. PubMed ID: 31500562
[TBL] [Abstract][Full Text] [Related]
4. HSYMDOCK: a docking web server for predicting the structure of protein homo-oligomers with Cn or Dn symmetry.
Yan Y; Tao H; Huang SY
Nucleic Acids Res; 2018 Jul; 46(W1):W423-W431. PubMed ID: 29846641
[TBL] [Abstract][Full Text] [Related]
5. Comparative analyses of quaternary arrangements in homo-oligomeric proteins in superfamilies: Functional implications.
Sudha G; Srinivasan N
Proteins; 2016 Sep; 84(9):1190-202. PubMed ID: 27177429
[TBL] [Abstract][Full Text] [Related]
6. pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions.
Pallara C; Jiménez-García B; Romero M; Moal IH; Fernández-Recio J
Proteins; 2017 Mar; 85(3):487-496. PubMed ID: 27701776
[TBL] [Abstract][Full Text] [Related]
7. Structure determination of symmetric homo-oligomers by a complete search of symmetry configuration space, using NMR restraints and van der Waals packing.
Potluri S; Yan AK; Chou JJ; Donald BR; Bailey-Kellogg C
Proteins; 2006 Oct; 65(1):203-19. PubMed ID: 16897780
[TBL] [Abstract][Full Text] [Related]
8. Modeling of Protein Complexes and Molecular Assemblies with pyDock.
Rosell M; Rodríguez-Lumbreras LA; Fernández-Recio J
Methods Mol Biol; 2020; 2165():175-198. PubMed ID: 32621225
[TBL] [Abstract][Full Text] [Related]
9. Modeling oligomers with Cn or Dn symmetry: application to CAPRI target 10.
Berchanski A; Segal D; Eisenstein M
Proteins; 2005 Aug; 60(2):202-6. PubMed ID: 15981250
[TBL] [Abstract][Full Text] [Related]
10. Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models.
El Houasli M; Maigret B; Devignes MD; Ghoorah AW; Grudinin S; Ritchie DW
Proteins; 2017 Mar; 85(3):463-469. PubMed ID: 27701764
[TBL] [Abstract][Full Text] [Related]
11. A geometric arrangement algorithm for structure determination of symmetric protein homo-oligomers from NOEs and RDCs.
Martin JW; Yan AK; Bailey-Kellogg C; Zhou P; Donald BR
J Comput Biol; 2011 Nov; 18(11):1507-23. PubMed ID: 22035328
[TBL] [Abstract][Full Text] [Related]
12. DR-SIP: protocols for higher order structure modeling with distance restraints- and cyclic symmetry-imposed packing.
Chan J; Zou J; Ortiz CL; Chang Chien CH; Pan RL; Yang LW
Bioinformatics; 2020 Jan; 36(2):449-461. PubMed ID: 31347658
[TBL] [Abstract][Full Text] [Related]
13. Predicted binding site information improves model ranking in protein docking using experimental and computer-generated target structures.
Maheshwari S; Brylinski M
BMC Struct Biol; 2015 Nov; 15():23. PubMed ID: 26597230
[TBL] [Abstract][Full Text] [Related]
14. Modeling Protein Homo-Oligomer Structures with GalaxyHomomer Web Server.
Baek M; Park T; Heo L; Seok C
Methods Mol Biol; 2020; 2165():127-137. PubMed ID: 32621222
[TBL] [Abstract][Full Text] [Related]
15. Systematic solution to homo-oligomeric structures determined by NMR.
Martin JW; Zhou P; Donald BR
Proteins; 2015 Apr; 83(4):651-61. PubMed ID: 25620116
[TBL] [Abstract][Full Text] [Related]
16. Template-based modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30.
Lee H; Baek M; Lee GR; Park S; Seok C
Proteins; 2017 Mar; 85(3):399-407. PubMed ID: 27770545
[TBL] [Abstract][Full Text] [Related]
17. ProtCHOIR: a tool for proteome-scale generation of homo-oligomers.
Torres PHM; Rossi AD; Blundell TL
Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34015821
[TBL] [Abstract][Full Text] [Related]
18. NMR structural inference of symmetric homo-oligomers.
Chandola H; Yan AK; Potluri S; Donald BR; Bailey-Kellogg C
J Comput Biol; 2011 Dec; 18(12):1757-75. PubMed ID: 21718128
[TBL] [Abstract][Full Text] [Related]
19. Computational design of self-assembling cyclic protein homo-oligomers.
Fallas JA; Ueda G; Sheffler W; Nguyen V; McNamara DE; Sankaran B; Pereira JH; Parmeggiani F; Brunette TJ; Cascio D; Yeates TR; Zwart P; Baker D
Nat Chem; 2017 Apr; 9(4):353-360. PubMed ID: 28338692
[TBL] [Abstract][Full Text] [Related]
20. GalaxyHomomer: a web server for protein homo-oligomer structure prediction from a monomer sequence or structure.
Baek M; Park T; Heo L; Park C; Seok C
Nucleic Acids Res; 2017 Jul; 45(W1):W320-W324. PubMed ID: 28387820
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
