BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

174 related articles for article (PubMed ID: 34452629)

  • 1. BRIE2: computational identification of splicing phenotypes from single-cell transcriptomic experiments.
    Huang Y; Sanguinetti G
    Genome Biol; 2021 Aug; 22(1):251. PubMed ID: 34452629
    [TBL] [Abstract][Full Text] [Related]  

  • 2. BRIE: transcriptome-wide splicing quantification in single cells.
    Huang Y; Sanguinetti G
    Genome Biol; 2017 Jun; 18(1):123. PubMed ID: 28655331
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Using BRIE to Detect and Analyze Splicing Isoforms in scRNA-Seq Data.
    Huang Y; Sanguinetti G
    Methods Mol Biol; 2019; 1935():175-185. PubMed ID: 30758827
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Identification of Splice Variants and Isoforms in Transcriptomics and Proteomics.
    Su T; Hollas MAR; Fellers RT; Kelleher NL
    Annu Rev Biomed Data Sci; 2023 Aug; 6():357-376. PubMed ID: 37561601
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Bulk and single-cell alternative splicing analyses reveal roles of TRA2B in myogenic differentiation.
    Chen G; Chen J; Qi L; Yin Y; Lin Z; Wen H; Zhang S; Xiao C; Bello SF; Zhang X; Nie Q; Luo W
    Cell Prolif; 2024 Feb; 57(2):e13545. PubMed ID: 37705195
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Can single-cell RNA sequencing crack the mystery of cells?
    Wang W; Gao D; Wang X
    Cell Biol Toxicol; 2018 Feb; 34(1):1-6. PubMed ID: 28733864
    [No Abstract]   [Full Text] [Related]  

  • 7. Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome.
    Tilgner H; Jahanbani F; Gupta I; Collier P; Wei E; Rasmussen M; Snyder M
    Genome Res; 2018 Feb; 28(2):231-242. PubMed ID: 29196558
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Pathway-guided analysis identifies Myc-dependent alternative pre-mRNA splicing in aggressive prostate cancers.
    Phillips JW; Pan Y; Tsai BL; Xie Z; Demirdjian L; Xiao W; Yang HT; Zhang Y; Lin CH; Cheng D; Hu Q; Liu S; Black DL; Witte ON; Xing Y
    Proc Natl Acad Sci U S A; 2020 Mar; 117(10):5269-5279. PubMed ID: 32086391
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Obstacles to detecting isoforms using full-length scRNA-seq data.
    Westoby J; Artemov P; Hemberg M; Ferguson-Smith A
    Genome Biol; 2020 Mar; 21(1):74. PubMed ID: 32293520
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Bayesian nonparametric discovery of isoforms and individual specific quantification.
    Aguiar D; Cheng LF; Dumitrascu B; Mordelet F; Pai AA; Engelhardt BE
    Nat Commun; 2018 Apr; 9(1):1681. PubMed ID: 29703885
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome.
    Reixachs-Solé M; Ruiz-Orera J; Albà MM; Eyras E
    Nat Commun; 2020 Apr; 11(1):1768. PubMed ID: 32286305
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ASAS-EGB: A statistical framework for estimating allele-specific alternative splicing events using transcriptome data.
    Dong L; Wang J; Wang G
    Comput Biol Med; 2023 Jun; 160():106981. PubMed ID: 37163967
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Splicing heterogeneity: separating signal from noise.
    Wan Y; Larson DR
    Genome Biol; 2018 Jul; 19(1):86. PubMed ID: 29986741
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Single-cell long-read sequencing in human cerebral organoids uncovers cell-type-specific and autism-associated exons.
    Yang Y; Yang R; Kang B; Qian S; He X; Zhang X
    Cell Rep; 2023 Nov; 42(11):113335. PubMed ID: 37889749
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Identification of Alternative Splicing in Proteomes of Human Melanoma Cell Lines without RNA Sequencing Data.
    Lobas AA; Solovyeva EM; Levitsky LI; Goncharov AO; Lyssuk EY; Larin SS; Moshkovskii SA; Gorshkov MV
    Int J Mol Sci; 2023 Jan; 24(3):. PubMed ID: 36768787
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Gene expression and splicing alterations analyzed by high throughput RNA sequencing of chronic lymphocytic leukemia specimens.
    Liao W; Jordaan G; Nham P; Phan RT; Pelegrini M; Sharma S
    BMC Cancer; 2015 Oct; 15():714. PubMed ID: 26474785
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Assisted transcriptome reconstruction and splicing orthology.
    Blanquart S; Varré JS; Guertin P; Perrin A; Bergeron A; Swenson KM
    BMC Genomics; 2016 Nov; 17(Suppl 10):786. PubMed ID: 28185551
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Accurate inference of isoforms from multiple sample RNA-Seq data.
    Tasnim M; Ma S; Yang EW; Jiang T; Li W
    BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S15. PubMed ID: 25708199
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A Computational Analysis of Alternative Splicing across Mammalian Tissues Reveals Circadian and Ultradian Rhythms in Splicing Events.
    El-Athman R; Knezevic D; Fuhr L; Relógio A
    Int J Mol Sci; 2019 Aug; 20(16):. PubMed ID: 31443305
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Studying Isoform-Specific mRNA Recruitment to Polyribosomes with Frac-seq.
    Martinez-Nunez RT; Sanford JR
    Methods Mol Biol; 2016; 1358():99-108. PubMed ID: 26463379
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.