These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

199 related articles for article (PubMed ID: 34453168)

  • 1. Functional meta-omics provide critical insights into long- and short-read assemblies.
    Galata V; Busi SB; Kunath BJ; de Nies L; Calusinska M; Halder R; May P; Wilmes P; Laczny CC
    Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34453168
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Advancing metagenome-assembled genome-based pathogen identification: unraveling the power of long-read assembly algorithms in Oxford Nanopore sequencing.
    Chen Z; Grim CJ; Ramachandran P; Meng J
    Microbiol Spectr; 2024 Jun; 12(6):e0011724. PubMed ID: 38687063
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Benchmarking genome assembly methods on metagenomic sequencing data.
    Zhang Z; Yang C; Veldsman WP; Fang X; Zhang L
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36917471
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly.
    Kang JB; Siranosian BA; Moss EL; Banaei N; Andermann TM; Bhatt AS
    BMC Bioinformatics; 2019 Dec; 20(Suppl 16):585. PubMed ID: 31787070
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Improved Assembly of Metagenome-Assembled Genomes and Viruses in Tibetan Saline Lake Sediment by HiFi Metagenomic Sequencing.
    Tao Y; Xun F; Zhao C; Mao Z; Li B; Xing P; Wu QL
    Microbiol Spectr; 2023 Feb; 11(1):e0332822. PubMed ID: 36475839
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes.
    Bertrand D; Shaw J; Kalathiyappan M; Ng AHQ; Kumar MS; Li C; Dvornicic M; Soldo JP; Koh JY; Tong C; Ng OT; Barkham T; Young B; Marimuthu K; Chng KR; Sikic M; Nagarajan N
    Nat Biotechnol; 2019 Aug; 37(8):937-944. PubMed ID: 31359005
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Generation and application of pseudo-long reads for metagenome assembly.
    Sim M; Lee J; Wy S; Park N; Lee D; Kwon D; Kim J
    Gigascience; 2022 May; 11():. PubMed ID: 35579554
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.
    Olson ND; Treangen TJ; Hill CM; Cepeda-Espinoza V; Ghurye J; Koren S; Pop M
    Brief Bioinform; 2019 Jul; 20(4):1140-1150. PubMed ID: 28968737
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A comprehensive investigation of metagenome assembly by linked-read sequencing.
    Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
    Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Critical evaluation of short, long, and hybrid assembly for contextual analysis of antibiotic resistance genes in complex environmental metagenomes.
    Brown CL; Keenum IM; Dai D; Zhang L; Vikesland PJ; Pruden A
    Sci Rep; 2021 Feb; 11(1):3753. PubMed ID: 33580146
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Strainberry: automated strain separation in low-complexity metagenomes using long reads.
    Vicedomini R; Quince C; Darling AE; Chikhi R
    Nat Commun; 2021 Jul; 12(1):4485. PubMed ID: 34301928
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Emerging tools for understanding the human microbiome.
    Ghosh TS; Das M
    Prog Mol Biol Transl Sci; 2022; 191(1):29-51. PubMed ID: 36270681
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Metagenomic Next-Generation Sequencing of Nasopharyngeal Specimens Collected from Confirmed and Suspect COVID-19 Patients.
    Mostafa HH; Fissel JA; Fanelli B; Bergman Y; Gniazdowski V; Dadlani M; Carroll KC; Colwell RR; Simner PJ
    mBio; 2020 Nov; 11(6):. PubMed ID: 33219095
    [TBL] [Abstract][Full Text] [Related]  

  • 15. LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome.
    Yang C; Zhang Z; Huang Y; Xie X; Liao H; Xiao J; Veldsman WP; Yin K; Fang X; Zhang L
    Gigascience; 2024 Jan; 13():. PubMed ID: 38869148
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Graph mining for next generation sequencing: leveraging the assembly graph for biological insights.
    Warnke-Sommer J; Ali H
    BMC Genomics; 2016 May; 17():340. PubMed ID: 27154001
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Exploring high-quality microbial genomes by assembling short-reads with long-range connectivity.
    Zhang Z; Xiao J; Wang H; Yang C; Huang Y; Yue Z; Chen Y; Han L; Yin K; Lyu A; Fang X; Zhang L
    Nat Commun; 2024 May; 15(1):4631. PubMed ID: 38821971
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Assembly methods for nanopore-based metagenomic sequencing: a comparative study.
    Latorre-Pérez A; Villalba-Bermell P; Pascual J; Vilanova C
    Sci Rep; 2020 Aug; 10(1):13588. PubMed ID: 32788623
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim.
    Yang C; Lo T; Nip KM; Hafezqorani S; Warren RL; Birol I
    Gigascience; 2023 Mar; 12():. PubMed ID: 36939007
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Practical evaluation of 11 de novo assemblers in metagenome assembly.
    Forouzan E; Shariati P; Mousavi Maleki MS; Karkhane AA; Yakhchali B
    J Microbiol Methods; 2018 Aug; 151():99-105. PubMed ID: 29953874
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.