504 related articles for article (PubMed ID: 34454585)
1. The first genome assembly of fungal pathogen Pyrenophora tritici-repentis race 1 isolate using Oxford Nanopore MinION sequencing.
Moolhuijzen P; See PT; Moffat CS
BMC Res Notes; 2021 Aug; 14(1):334. PubMed ID: 34454585
[TBL] [Abstract][Full Text] [Related]
2. A new PacBio genome sequence of an Australian Pyrenophora tritici-repentis race 1 isolate.
Moolhuijzen P; See PT; Moffat CS
BMC Res Notes; 2019 Oct; 12(1):642. PubMed ID: 31585535
[TBL] [Abstract][Full Text] [Related]
3. Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.
Goldstein S; Beka L; Graf J; Klassen JL
BMC Genomics; 2019 Jan; 20(1):23. PubMed ID: 30626323
[TBL] [Abstract][Full Text] [Related]
4. Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity.
Moolhuijzen P; See PT; Hane JK; Shi G; Liu Z; Oliver RP; Moffat CS
BMC Genomics; 2018 Apr; 19(1):279. PubMed ID: 29685100
[TBL] [Abstract][Full Text] [Related]
5. PacBio genome sequencing reveals new insights into the genomic organisation of the multi-copy ToxB gene of the wheat fungal pathogen Pyrenophora tritici-repentis.
Moolhuijzen P; See PT; Moffat CS
BMC Genomics; 2020 Sep; 21(1):645. PubMed ID: 32957933
[TBL] [Abstract][Full Text] [Related]
6. The pangenome of the wheat pathogen Pyrenophora tritici-repentis reveals novel transposons associated with necrotrophic effectors ToxA and ToxB.
Gourlie R; McDonald M; Hafez M; Ortega-Polo R; Low KE; Abbott DW; Strelkov SE; Daayf F; Aboukhaddour R
BMC Biol; 2022 Oct; 20(1):239. PubMed ID: 36280878
[TBL] [Abstract][Full Text] [Related]
7. A genome-wide genetic linkage map and reference quality genome sequence for a new race in the wheat pathogen Pyrenophora tritici-repentis.
Kariyawasam GK; Wyatt N; Shi G; Liu S; Yan C; Ma Y; Zhong S; Rasmussen JB; Moolhuijzen P; Moffat CS; Friesen TL; Liu Z
Fungal Genet Biol; 2021 Jul; 152():103571. PubMed ID: 34015431
[TBL] [Abstract][Full Text] [Related]
8. de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.
Istace B; Friedrich A; d'Agata L; Faye S; Payen E; Beluche O; Caradec C; Davidas S; Cruaud C; Liti G; Lemainque A; Engelen S; Wincker P; Schacherer J; Aury JM
Gigascience; 2017 Feb; 6(2):1-13. PubMed ID: 28369459
[TBL] [Abstract][Full Text] [Related]
9. A global pangenome for the wheat fungal pathogen
Moolhuijzen PM; See PT; Shi G; Powell HR; Cockram J; Jørgensen LN; Benslimane H; Strelkov SE; Turner J; Liu Z; Moffat CS
Microb Genom; 2022 Oct; 8(10):. PubMed ID: 36214662
[TBL] [Abstract][Full Text] [Related]
10. Polishing the Oxford Nanopore long-read assemblies of bacterial pathogens with Illumina short reads to improve genomic analyses.
Chen Z; Erickson DL; Meng J
Genomics; 2021 May; 113(3):1366-1377. PubMed ID: 33716184
[TBL] [Abstract][Full Text] [Related]
11. Genome assembly using Nanopore-guided long and error-free DNA reads.
Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
[TBL] [Abstract][Full Text] [Related]
12. The use of Oxford Nanopore native barcoding for complete genome assembly.
Bayliss SC; Hunt VL; Yokoyama M; Thorpe HA; Feil EJ
Gigascience; 2017 Mar; 6(3):1-6. PubMed ID: 28327913
[TBL] [Abstract][Full Text] [Related]
13. Genome characterization of Pyrenophora tritici-repentis isolates reveals high plasticity and independent chromosomal location of ToxA and ToxB.
Aboukhaddour R; Cloutier S; Ballance GM; Lamari L
Mol Plant Pathol; 2009 Mar; 10(2):201-12. PubMed ID: 19236569
[TBL] [Abstract][Full Text] [Related]
14. Chromosome-level de novo assembly of Coprinopsis cinerea A43mut B43mut pab1-1 #326 and genetic variant identification of mutants using Nanopore MinION sequencing.
Xie Y; Zhong Y; Chang J; Kwan HS
Fungal Genet Biol; 2021 Jan; 146():103485. PubMed ID: 33253902
[TBL] [Abstract][Full Text] [Related]
15. De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms.
Giordano F; Aigrain L; Quail MA; Coupland P; Bonfield JK; Davies RM; Tischler G; Jackson DK; Keane TM; Li J; Yue JX; Liti G; Durbin R; Ning Z
Sci Rep; 2017 Jun; 7(1):3935. PubMed ID: 28638050
[TBL] [Abstract][Full Text] [Related]
16. Homologs of ToxB, a host-selective toxin gene from Pyrenophora tritici-repentis, are present in the genome of sister-species Pyrenophora bromi and other members of the Ascomycota.
Andrie RM; Schoch CL; Hedges R; Spatafora JW; Ciuffetti LM
Fungal Genet Biol; 2008 Mar; 45(3):363-77. PubMed ID: 18226934
[TBL] [Abstract][Full Text] [Related]
17. Are we there yet? Benchmarking low-coverage nanopore long-read sequencing for the assembling of mitochondrial genomes using the vulnerable silky shark Carcharhinus falciformis.
Baeza JA; García-De León FJ
BMC Genomics; 2022 Apr; 23(1):320. PubMed ID: 35459089
[TBL] [Abstract][Full Text] [Related]
18. Oxford Nanopore MinION Sequencing and Genome Assembly.
Lu H; Giordano F; Ning Z
Genomics Proteomics Bioinformatics; 2016 Oct; 14(5):265-279. PubMed ID: 27646134
[TBL] [Abstract][Full Text] [Related]
19. Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence.
Manning VA; Pandelova I; Dhillon B; Wilhelm LJ; Goodwin SB; Berlin AM; Figueroa M; Freitag M; Hane JK; Henrissat B; Holman WH; Kodira CD; Martin J; Oliver RP; Robbertse B; Schackwitz W; Schwartz DC; Spatafora JW; Turgeon BG; Yandava C; Young S; Zhou S; Zeng Q; Grigoriev IV; Ma LJ; Ciuffetti LM
G3 (Bethesda); 2013 Jan; 3(1):41-63. PubMed ID: 23316438
[TBL] [Abstract][Full Text] [Related]
20. A complete high-quality MinION nanopore assembly of an extensively drug-resistant Mycobacterium tuberculosis Beijing lineage strain identifies novel variation in repetitive PE/PPE gene regions.
Bainomugisa A; Duarte T; Lavu E; Pandey S; Coulter C; Marais BJ; Coin LM
Microb Genom; 2018 Jul; 4(7):. PubMed ID: 29906261
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
