113 related articles for article (PubMed ID: 3447050)
21. A single 2'-hydroxyl group converts B-DNA to A-DNA. Crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d(CCGG) with a novel intermolecular G-C base-paired quadruplet.
Ban C; Ramakrishnan B; Sundaralingam M
J Mol Biol; 1994 Feb; 236(1):275-85. PubMed ID: 7508984
[TBL] [Abstract][Full Text] [Related]
22. Parallel DNA double helices incorporating isoG or m5isoC bases studied by FTIR, CD and molecular modeling.
Geinguenaud F; Mondragon-Sanchez JA; Liquier J; Shchyolkina AK; Klement R; Arndt-Jovin DJ; Jovin TM; Taillandier E
Spectrochim Acta A Mol Biomol Spectrosc; 2005 Feb; 61(4):579-87. PubMed ID: 15649787
[TBL] [Abstract][Full Text] [Related]
23. Stability of nucleic acid base pairs in organic solvents: molecular dynamics, molecular dynamics/quenching, and correlated ab initio study.
Zendlová L; Hobza P; Kabelác M
J Phys Chem B; 2007 Mar; 111(10):2591-609. PubMed ID: 17302446
[TBL] [Abstract][Full Text] [Related]
24. Monte Carlo simulations of the solution structure of simple alcohols in water-acetonitrile mixtures.
Nagy PI; Erhardt PW
J Phys Chem B; 2005 Mar; 109(12):5855-72. PubMed ID: 16851638
[TBL] [Abstract][Full Text] [Related]
25. Spermine: an "invisible" component in the crystals of B-DNA. A grand canonical Monte Carlo and molecular dynamics simulation study.
Korolev N; Lyubartsev AP; Nordenskiöld L; Laaksonen A
J Mol Biol; 2001 May; 308(5):907-17. PubMed ID: 11352581
[TBL] [Abstract][Full Text] [Related]
26. A theoretical study of the aqueous hydration of canonical B d(CGCGAATTCGCG): Monte Carlo simulation and comparison with crystallographic ordered water sites.
Subramanian PS; Beveridge DL
J Biomol Struct Dyn; 1989 Jun; 6(6):1093-122. PubMed ID: 2684218
[TBL] [Abstract][Full Text] [Related]
27. [The possible role of rare tautomers of DNA bases in mutagenesis: study of the effect of hydration on tautomeric equilibrium by the Monte-Carlo method].
Poltev VI; Gonzalez EJ; Teplukhin AV
Mol Biol (Mosk); 1995; 29(2):365-75. PubMed ID: 7783741
[TBL] [Abstract][Full Text] [Related]
28. Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: the role of non-Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding.
Csaszar K; Spacková N; Stefl R; Sponer J; Leontis NB
J Mol Biol; 2001 Nov; 313(5):1073-91. PubMed ID: 11700064
[TBL] [Abstract][Full Text] [Related]
29. [Possibilities of forming a hydrogen-bonded cytosine-adenine pair in the structure of transfer ribonucleic acid and at the wobble-position of the codon-anticodon complex].
Mikel'saar RN
Mol Biol (Mosk); 1980; 14(3):694-707. PubMed ID: 7402210
[TBL] [Abstract][Full Text] [Related]
30. Water and ion binding around RNA and DNA (C,G) oligomers.
Auffinger P; Westhof E
J Mol Biol; 2000 Jul; 300(5):1113-31. PubMed ID: 10903858
[TBL] [Abstract][Full Text] [Related]
31. Monte carlo simulations of site-specific radical attack to DNA bases.
Aydogan B; Bolch WE; Swarts SG; Turner JE; Marshall DT
Radiat Res; 2008 Feb; 169(2):223-31. PubMed ID: 18220458
[TBL] [Abstract][Full Text] [Related]
32. [Study of effect of water on the interaction of DNA and actinocin derivatives with various aminoalkyl chain length by infrared spectrophotometry and computer modeling].
Berezniak EG; Semenov MA; Bol'bukh TV; Dukhopel'nikov EV; Shestopalova AV; Maleev VIa
Biofizika; 2002; 47(6):1005-14. PubMed ID: 12500563
[TBL] [Abstract][Full Text] [Related]
33. [The mechanism of tautomeric transitions of nucleic acid bases with limited access to water molecules].
Poltev VI; Kosevich MV; Shelkovskiĭ VS; Pashinskaia VA; Gonzales EJ; Teplukhin AV; Malenkov GG
Mol Biol (Mosk); 1995; 29(2):376-82. PubMed ID: 7783742
[TBL] [Abstract][Full Text] [Related]
34. A role of elementary interactions between nucleic-acid base and amino-acid side chains in specificity of ribonuclease.
Takenaka A; Shibata M; Takimoto M; Sasada Y
Nucleic Acids Symp Ser; 1984; (15):113-6. PubMed ID: 6522281
[TBL] [Abstract][Full Text] [Related]
35. Hydration of mononucleotides.
Liu D; Wyttenbach T; Bowers MT
J Am Chem Soc; 2006 Nov; 128(47):15155-63. PubMed ID: 17117867
[TBL] [Abstract][Full Text] [Related]
36. Exploring DNA groove water dynamics through hydrogen bond lifetime and orientational relaxation.
Pal S; Maiti PK; Bagchi B
J Chem Phys; 2006 Dec; 125(23):234903. PubMed ID: 17190573
[TBL] [Abstract][Full Text] [Related]
37. Simulation of interactions between nucleic acid bases by refined atom-atom potential functions.
Poltev VI; Shulyupina NV
J Biomol Struct Dyn; 1986 Feb; 3(4):739-65. PubMed ID: 3271047
[TBL] [Abstract][Full Text] [Related]
38. The crystal structure of the octamer [r(guauaca)dC]2 with six Watson-Crick base-pairs and two 3' overhang residues.
Shi K; Biswas R; Mitra SN; Sundaralingam M
J Mol Biol; 2000 May; 299(1):113-22. PubMed ID: 10860726
[TBL] [Abstract][Full Text] [Related]
39. Monte Carlo simulation of hydration of the guanine-uracil pairs with guanine in two tautomeric forms: contribution of water bridging to relative stability of mispairs.
Poltev VI; Teplukhin AV; Kwiatkowski JS
J Biomol Struct Dyn; 1992 Feb; 9(4):747-57. PubMed ID: 1616628
[TBL] [Abstract][Full Text] [Related]
40. Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2).
Chen X; McDowell JA; Kierzek R; Krugh TR; Turner DH
Biochemistry; 2000 Aug; 39(30):8970-82. PubMed ID: 10913310
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]