50 related articles for article (PubMed ID: 34485935)
1. Deconvolution of in vivo protein-RNA contacts using fractionated eCLIP-seq.
Biancon G; Busarello E; Joshi P; Lesch BJ; Halene S; Tebaldi T
STAR Protoc; 2022 Dec; 3(4):101823. PubMed ID: 36595959
[TBL] [Abstract][Full Text] [Related]
2. Protocol to process crosslinking and immunoprecipitation data into annotated binding sites.
Xu S; Nguyen GG; Naritomi JT; Kopalle HM; Yee BA; Rothamel KL; Boyle EA; Yeo GW
STAR Protoc; 2024 Jun; 5(2):103040. PubMed ID: 38669139
[TBL] [Abstract][Full Text] [Related]
3. Chemical cross-linking to study protein self-assembly in cellulo.
Müller L; Salman S; Hoppe T
STAR Protoc; 2024 Jun; 5(2):103032. PubMed ID: 38652664
[TBL] [Abstract][Full Text] [Related]
4. Direct Mapping of Higher-Order RNA Interactions by SHAPE-JuMP.
Christy TW; Giannetti CA; Houlihan G; Smola MJ; Rice GM; Wang J; Dokholyan NV; Laederach A; Holliger P; Weeks KM
Biochemistry; 2021 Jun; 60(25):1971-1982. PubMed ID: 34121404
[TBL] [Abstract][Full Text] [Related]
5. Native Purification and Analysis of Long RNAs.
Chillón I; Marcia M; Legiewicz M; Liu F; Somarowthu S; Pyle AM
Methods Enzymol; 2015; 558():3-37. PubMed ID: 26068736
[TBL] [Abstract][Full Text] [Related]
6. Protocol to analyze and quantify protein-methylated RNA interactions in mammalian cells with a combination of RNA immunoprecipitation and nucleoside mass spectrometry.
Tsao N; Soll JM; Mosammaparast N
STAR Protoc; 2022 Jun; 3(2):101268. PubMed ID: 35391937
[TBL] [Abstract][Full Text] [Related]
7. A novel SHAPE reagent enables the analysis of RNA structure in living cells with unprecedented accuracy.
Marinus T; Fessler AB; Ogle CA; Incarnato D
Nucleic Acids Res; 2021 Apr; 49(6):e34. PubMed ID: 33398343
[TBL] [Abstract][Full Text] [Related]
8. Reactivity-based RNA profiling for analyzing transcriptome interactions of small molecules in human cells.
Fang L; Kool ET
STAR Protoc; 2023 Dec; 4(4):102670. PubMed ID: 37917579
[TBL] [Abstract][Full Text] [Related]
9. Computational generation of proteins with predetermined three-dimensional shapes using ProteinSolver.
Strokach A; Becerra D; Corbi-Verge C; Perez-Riba A; Kim PM
STAR Protoc; 2021 Jun; 2(2):100505. PubMed ID: 33997819
[TBL] [Abstract][Full Text] [Related]
10. Progress and challenges for chemical probing of RNA structure inside living cells.
Kubota M; Tran C; Spitale RC
Nat Chem Biol; 2015 Dec; 11(12):933-41. PubMed ID: 26575240
[TBL] [Abstract][Full Text] [Related]
11. How does precursor RNA structure influence RNA processing and gene expression?
Herbert A; Hatfield A; Lackey L
Biosci Rep; 2023 Mar; 43(3):. PubMed ID: 36689327
[TBL] [Abstract][Full Text] [Related]
12. Footprinting SHAPE-eCLIP Reveals Transcriptome-wide Hydrogen Bonds at RNA-Protein Interfaces.
Corley M; Flynn RA; Lee B; Blue SM; Chang HY; Yeo GW
Mol Cell; 2020 Dec; 80(5):903-914.e8. PubMed ID: 33242392
[TBL] [Abstract][Full Text] [Related]
13. Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).
Van Nostrand EL; Pratt GA; Shishkin AA; Gelboin-Burkhart C; Fang MY; Sundararaman B; Blue SM; Nguyen TB; Surka C; Elkins K; Stanton R; Rigo F; Guttman M; Yeo GW
Nat Methods; 2016 Jun; 13(6):508-14. PubMed ID: 27018577
[TBL] [Abstract][Full Text] [Related]
14. Enhanced Crosslinking Immunoprecipitation (eCLIP) Method for Efficient Identification of Protein-bound RNA in Mouse Testis.
Xu Q; Wang C; Ling L; Yue Q; Liu M; Zhang S; Fu K; Ye L; Zheng K
J Vis Exp; 2019 May; (147):. PubMed ID: 31132071
[TBL] [Abstract][Full Text] [Related]
15. RNA structural analysis by evolving SHAPE chemistry.
Spitale RC; Flynn RA; Torre EA; Kool ET; Chang HY
Wiley Interdiscip Rev RNA; 2014; 5(6):867-81. PubMed ID: 25132067
[TBL] [Abstract][Full Text] [Related]
16. SHAPE Directed Discovery of New Functions in Large RNAs.
Weeks KM
Acc Chem Res; 2021 May; 54(10):2502-2517. PubMed ID: 33960770
[TBL] [Abstract][Full Text] [Related]
17. fSHAPE, fSHAPE-eCLIP, and SHAPE-eCLIP probe transcript regions that interact with specific proteins.
Corley M; Flynn RA; Blue SM; Yee BA; Chang HY; Yeo GW
STAR Protoc; 2021 Sep; 2(3):100762. PubMed ID: 34485935
[TBL] [Abstract][Full Text] [Related]
18.
; ; . PubMed ID:
[No Abstract] [Full Text] [Related]
19.
; ; . PubMed ID:
[No Abstract] [Full Text] [Related]
20.
; ; . PubMed ID:
[No Abstract] [Full Text] [Related]
[Next] [New Search]
