These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

607 related articles for article (PubMed ID: 34487123)

  • 1. Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies.
    Sharon BM; Hulyalkar NV; Nguyen VH; Zimmern PE; Palmer KL; De Nisco NJ
    J Vis Exp; 2021 Aug; (174):. PubMed ID: 34487123
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools.
    Derakhshani H; Bernier SP; Marko VA; Surette MG
    BMC Genomics; 2020 Jul; 21(1):519. PubMed ID: 32727443
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.
    Goldstein S; Beka L; Graf J; Klassen JL
    BMC Genomics; 2019 Jan; 20(1):23. PubMed ID: 30626323
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes.
    De Maio N; Shaw LP; Hubbard A; George S; Sanderson ND; Swann J; Wick R; AbuOun M; Stubberfield E; Hoosdally SJ; Crook DW; Peto TEA; Sheppard AE; Bailey MJ; Read DS; Anjum MF; Walker AS; Stoesser N; On Behalf Of The Rehab Consortium
    Microb Genom; 2019 Sep; 5(9):. PubMed ID: 31483244
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
    Wick RR; Judd LM; Gorrie CL; Holt KE
    PLoS Comput Biol; 2017 Jun; 13(6):e1005595. PubMed ID: 28594827
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Genome assembly using Nanopore-guided long and error-free DNA reads.
    Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
    BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Software for pre-processing Illumina next-generation sequencing short read sequences.
    Chen C; Khaleel SS; Huang H; Wu CH
    Source Code Biol Med; 2014; 9():8. PubMed ID: 24955109
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Improved Assembly of Metagenome-Assembled Genomes and Viruses in Tibetan Saline Lake Sediment by HiFi Metagenomic Sequencing.
    Tao Y; Xun F; Zhao C; Mao Z; Li B; Xing P; Wu QL
    Microbiol Spectr; 2023 Feb; 11(1):e0332822. PubMed ID: 36475839
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Complete hybrid genome assembly of clinical multidrug-resistant
    Sydenham TV; Overballe-Petersen S; Hasman H; Wexler H; Kemp M; Justesen US
    Microb Genom; 2019 Nov; 5(11):. PubMed ID: 31697231
    [No Abstract]   [Full Text] [Related]  

  • 10. High quality 3C de novo assembly and annotation of a multidrug resistant ST-111 Pseudomonas aeruginosa genome: Benchmark of hybrid and non-hybrid assemblers.
    Molina-Mora JA; Campos-Sánchez R; Rodríguez C; Shi L; García F
    Sci Rep; 2020 Jan; 10(1):1392. PubMed ID: 31996747
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system.
    Somerville V; Lutz S; Schmid M; Frei D; Moser A; Irmler S; Frey JE; Ahrens CH
    BMC Microbiol; 2019 Jun; 19(1):143. PubMed ID: 31238873
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Benchmarking Long-Read Assemblers for Genomic Analyses of Bacterial Pathogens Using Oxford Nanopore Sequencing.
    Chen Z; Erickson DL; Meng J
    Int J Mol Sci; 2020 Dec; 21(23):. PubMed ID: 33271875
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Benchmarking hybrid assemblies of Giardia and prediction of widespread intra-isolate structural variation.
    Pollo SMJ; Reiling SJ; Wit J; Workentine ML; Guy RA; Batoff GW; Yee J; Dixon BR; Wasmuth JD
    Parasit Vectors; 2020 Feb; 13(1):108. PubMed ID: 32111234
    [TBL] [Abstract][Full Text] [Related]  

  • 14. High precision genome sequencing of engineered Gluconobacter oxydans 621H by combining long nanopore and short accurate Illumina reads.
    Kranz A; Vogel A; Degner U; Kiefler I; Bott M; Usadel B; Polen T
    J Biotechnol; 2017 Sep; 258():197-205. PubMed ID: 28433722
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Can we use it? On the utility of de novo and reference-based assembly of Nanopore data for plant plastome sequencing.
    Scheunert A; Dorfner M; Lingl T; Oberprieler C
    PLoS One; 2020; 15(3):e0226234. PubMed ID: 32208422
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comparison of De Novo Assembly Strategies for Bacterial Genomes.
    Zhang P; Jiang D; Wang Y; Yao X; Luo Y; Yang Z
    Int J Mol Sci; 2021 Jul; 22(14):. PubMed ID: 34299288
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Advancing metagenome-assembled genome-based pathogen identification: unraveling the power of long-read assembly algorithms in Oxford Nanopore sequencing.
    Chen Z; Grim CJ; Ramachandran P; Meng J
    Microbiol Spectr; 2024 Jun; 12(6):e0011724. PubMed ID: 38687063
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies.
    Wetzel J; Kingsford C; Pop M
    BMC Bioinformatics; 2011 Apr; 12():95. PubMed ID: 21486487
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Telomere length de novo assembly of all 7 chromosomes and mitogenome sequencing of the model entomopathogenic fungus, Metarhizium brunneum, by means of a novel assembly pipeline.
    Saud Z; Kortsinoglou AM; Kouvelis VN; Butt TM
    BMC Genomics; 2021 Jan; 22(1):87. PubMed ID: 33509090
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads.
    Commichaux S; Javkar K; Ramachandran P; Nagarajan N; Bertrand D; Chen Y; Reed E; Gonzalez-Escalona N; Strain E; Rand H; Pop M; Ottesen A
    BMC Genomics; 2021 May; 22(1):389. PubMed ID: 34039264
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 31.