These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
166 related articles for article (PubMed ID: 34522901)
1. Integrated protocol for exitron and exitron-derived neoantigen identification using human RNA-seq data with ScanExitron and ScanNeo. Wang TY; Yang R STAR Protoc; 2021 Sep; 2(3):100788. PubMed ID: 34522901 [TBL] [Abstract][Full Text] [Related]
2. A pan-cancer transcriptome analysis of exitron splicing identifies novel cancer driver genes and neoepitopes. Wang TY; Liu Q; Ren Y; Alam SK; Wang L; Zhu Z; Hoeppner LH; Dehm SM; Cao Q; Yang R Mol Cell; 2021 May; 81(10):2246-2260.e12. PubMed ID: 33861991 [TBL] [Abstract][Full Text] [Related]
3. ScanExitronLR: characterization and quantification of exitron splicing events in long-read RNA-seq data. Fry J; Li Y; Yang R Bioinformatics; 2022 Oct; 38(21):4966-4968. PubMed ID: 36099042 [TBL] [Abstract][Full Text] [Related]
4. ScanNeo: identifying indel-derived neoantigens using RNA-Seq data. Wang TY; Wang L; Alam SK; Hoeppner LH; Yang R Bioinformatics; 2019 Oct; 35(20):4159-4161. PubMed ID: 30887025 [TBL] [Abstract][Full Text] [Related]
5. ScanNeo2: a comprehensive workflow for neoantigen detection and immunogenicity prediction from diverse genomic and transcriptomic alterations. Schäfer RA; Guo Q; Yang R Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37882750 [TBL] [Abstract][Full Text] [Related]
7. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data. Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805 [TBL] [Abstract][Full Text] [Related]
8. OpenVax: An Open-Source Computational Pipeline for Cancer Neoantigen Prediction. Kodysh J; Rubinsteyn A Methods Mol Biol; 2020; 2120():147-160. PubMed ID: 32124317 [TBL] [Abstract][Full Text] [Related]
9. neoANT-HILL: an integrated tool for identification of potential neoantigens. Coelho ACMF; Fonseca AL; Martins DL; Lins PBR; da Cunha LM; de Souza SJ BMC Med Genomics; 2020 Feb; 13(1):30. PubMed ID: 32087727 [TBL] [Abstract][Full Text] [Related]
10. ProGeo-neo: a customized proteogenomic workflow for neoantigen prediction and selection. Li Y; Wang G; Tan X; Ouyang J; Zhang M; Song X; Liu Q; Leng Q; Chen L; Xie L BMC Med Genomics; 2020 Apr; 13(Suppl 5):52. PubMed ID: 32241270 [TBL] [Abstract][Full Text] [Related]
11. In Silico Prediction of Tumor Neoantigens with TIminer. Kirchmair A; Finotello F Methods Mol Biol; 2020; 2120():129-145. PubMed ID: 32124316 [TBL] [Abstract][Full Text] [Related]
12. Protocol for comprehensive RNA sequencing analysis of murine long non-coding RNAs during aging. Lu X; Zhou Q; Liu J; Sun L STAR Protoc; 2021 Jun; 2(2):100397. PubMed ID: 33786463 [TBL] [Abstract][Full Text] [Related]
13. Landscape of exitrons in gastric cancer. Zhang Y; Ye G; Yang Q; Zheng B; Zhang G; Hu Y; Yu J; Li G EBioMedicine; 2022 Oct; 84():104272. PubMed ID: 36137412 [TBL] [Abstract][Full Text] [Related]
14. Integrated Chip-Seq and RNA-Seq Data Analysis Coupled with Bioinformatics Approaches to Investigate Regulatory Landscape of Transcription Modulators in Breast Cancer Cells. Ramos J; Felty Q; Roy D Methods Mol Biol; 2020; 2102():35-59. PubMed ID: 31989549 [TBL] [Abstract][Full Text] [Related]
15. Proteogenomic identification of an immunogenic HLA class I neoantigen in mismatch repair-deficient colorectal cancer tissue. Hirama T; Tokita S; Nakatsugawa M; Murata K; Nannya Y; Matsuo K; Inoko H; Hirohashi Y; Hashimoto S; Ogawa S; Takemasa I; Sato N; Hata F; Kanaseki T; Torigoe T JCI Insight; 2021 Jul; 6(14):. PubMed ID: 34185709 [TBL] [Abstract][Full Text] [Related]
16. Investigation of Antigen-Specific T-Cell Receptor Clusters in Human Cancers. Zhang H; Liu L; Zhang J; Chen J; Ye J; Shukla S; Qiao J; Zhan X; Chen H; Wu CJ; Fu YX; Li B Clin Cancer Res; 2020 Mar; 26(6):1359-1371. PubMed ID: 31831563 [TBL] [Abstract][Full Text] [Related]
17. Protocol for High-Resolution Mapping of Splicing Products and Isoforms by RT-PCR Using Fluorescently Labeled Primers. Weathers I; Gabunilas J; Samson J; Roy K; Chanfreau GF STAR Protoc; 2020 Dec; 1(3):100140. PubMed ID: 33377034 [TBL] [Abstract][Full Text] [Related]
18. INTEGRATE-neo: a pipeline for personalized gene fusion neoantigen discovery. Zhang J; Mardis ER; Maher CA Bioinformatics; 2017 Feb; 33(4):555-557. PubMed ID: 27797777 [TBL] [Abstract][Full Text] [Related]
19. RNA Splicing and Cancer. Wang E; Aifantis I Trends Cancer; 2020 Aug; 6(8):631-644. PubMed ID: 32434734 [TBL] [Abstract][Full Text] [Related]
20. Protocol to detect immune levels, abnormal metabolism, and signaling pathways in tumor tissue based on scRNA-seq obtained from patient databases. Bai W STAR Protoc; 2024 Jun; 5(2):103065. PubMed ID: 38753488 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]