These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data. Faure L; Soldatov R; Kharchenko PV; Adameyko I Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36394263 [TBL] [Abstract][Full Text] [Related]
3. hacksig: a unified and tidy R framework to easily compute gene expression signature scores. Carenzo A; Pistore F; Serafini MS; Lenoci D; Licata AG; De Cecco L Bioinformatics; 2022 May; 38(10):2940-2942. PubMed ID: 35561166 [TBL] [Abstract][Full Text] [Related]
4. Efficient population-scale variant analysis and prioritization with VAPr. Birmingham A; Mark AM; Mazzaferro C; Xu G; Fisch KM Bioinformatics; 2018 Aug; 34(16):2843-2845. PubMed ID: 29659724 [TBL] [Abstract][Full Text] [Related]
5. Analysing high-throughput sequencing data in Python with HTSeq 2.0. Putri GH; Anders S; Pyl PT; Pimanda JE; Zanini F Bioinformatics; 2022 May; 38(10):2943-2945. PubMed ID: 35561197 [TBL] [Abstract][Full Text] [Related]
6. MetaSV: an accurate and integrative structural-variant caller for next generation sequencing. Mohiyuddin M; Mu JC; Li J; Bani Asadi N; Gerstein MB; Abyzov A; Wong WH; Lam HY Bioinformatics; 2015 Aug; 31(16):2741-4. PubMed ID: 25861968 [TBL] [Abstract][Full Text] [Related]
7. hapCon: estimating contamination of ancient genomes by copying from reference haplotypes. Huang Y; Ringbauer H Bioinformatics; 2022 Aug; 38(15):3768-3777. PubMed ID: 35695771 [TBL] [Abstract][Full Text] [Related]
8. Goldilocks: a tool for identifying genomic regions that are 'just right'. Nicholls SM; Clare A; Randall JC Bioinformatics; 2016 Jul; 32(13):2047-9. PubMed ID: 27153673 [TBL] [Abstract][Full Text] [Related]
10. PyGenePlexus: a Python package for gene discovery using network-based machine learning. Mancuso CA; Liu R; Krishnan A Bioinformatics; 2023 Feb; 39(2):. PubMed ID: 36721325 [TBL] [Abstract][Full Text] [Related]
11. Structural variant analysis for linked-read sequencing data with gemtools. Greer SU; Ji HP Bioinformatics; 2019 Nov; 35(21):4397-4399. PubMed ID: 30938757 [TBL] [Abstract][Full Text] [Related]
12. orfipy: a fast and flexible tool for extracting ORFs. Singh U; Wurtele ES Bioinformatics; 2021 Sep; 37(18):3019-3020. PubMed ID: 33576786 [TBL] [Abstract][Full Text] [Related]
13. SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability. Iakovishina D; Janoueix-Lerosey I; Barillot E; Regnier M; Boeva V Bioinformatics; 2016 Apr; 32(7):984-92. PubMed ID: 26740523 [TBL] [Abstract][Full Text] [Related]
14. Variant Library Annotation Tool (VaLiAnT): an oligonucleotide library design and annotation tool for saturation genome editing and other deep mutational scanning experiments. Barbon L; Offord V; Radford EJ; Butler AP; Gerety SS; Adams DJ; Tan HK; Waters AJ Bioinformatics; 2022 Jan; 38(4):892-899. PubMed ID: 34791067 [TBL] [Abstract][Full Text] [Related]
15. SVIM-asm: structural variant detection from haploid and diploid genome assemblies. Heller D; Vingron M Bioinformatics; 2021 Apr; 36(22-23):5519-5521. PubMed ID: 33346817 [TBL] [Abstract][Full Text] [Related]
17. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines. Meunier D; Pascarella A; Altukhov D; Jas M; Combrisson E; Lajnef T; Bertrand-Dubois D; Hadid V; Alamian G; Alves J; Barlaam F; Saive AL; Dehgan A; Jerbi K Neuroimage; 2020 Oct; 219():117020. PubMed ID: 32522662 [TBL] [Abstract][Full Text] [Related]
18. CapiPy: python-based GUI-application to assist in protein immobilization. Roura Padrosa D; Marchini V; Paradisi F Bioinformatics; 2021 Sep; 37(17):2761-2762. PubMed ID: 33459767 [TBL] [Abstract][Full Text] [Related]
19. FILTUS: a desktop GUI for fast and efficient detection of disease-causing variants, including a novel autozygosity detector. Vigeland MD; Gjøtterud KS; Selmer KK Bioinformatics; 2016 May; 32(10):1592-4. PubMed ID: 26819469 [TBL] [Abstract][Full Text] [Related]