56 related articles for article (PubMed ID: 34547403)
1. Differential analysis of chromatin accessibility and gene expression profiles identifies cis-regulatory elements in rat adipose and muscle.
Nair VD; Vasoya M; Nair V; Smith GR; Pincas H; Ge Y; Douglas CM; Esser KA; Sealfon SC
Genomics; 2021 Nov; 113(6):3827-3841. PubMed ID: 34547403
[TBL] [Abstract][Full Text] [Related]
2. Global gene expression and chromatin accessibility of the peripheral nervous system in animal models of persistent pain.
Stephens KE; Zhou W; Renfro Z; Ji Z; Ji H; Guan Y; Taverna SD
J Neuroinflammation; 2021 Aug; 18(1):185. PubMed ID: 34446036
[TBL] [Abstract][Full Text] [Related]
3. Differential Regulation of Male-Hormones-Related Enhancers Revealed by Chromatin Accessibility and Transcriptional Profiles in Pig Liver.
Chan S; Wang Y; Luo Y; Zheng M; Xie F; Xue M; Yang X; Xue P; Zha C; Fang M
Biomolecules; 2024 Apr; 14(4):. PubMed ID: 38672444
[TBL] [Abstract][Full Text] [Related]
4. Integrative ATAC-seq and RNA-seq analysis of myogenic differentiation of ovine skeletal muscle satellite cell.
Su Y; He S; Chen Q; Zhang H; Huang C; Zhao Q; Pu Y; He X; Jiang L; Ma Y; Zhao Q
Genomics; 2024 May; 116(3):110851. PubMed ID: 38692440
[TBL] [Abstract][Full Text] [Related]
5. Integrated ATAC-seq and RNA-seq data analysis identifies transcription factors related to rice stripe virus infection in Oryza sativa.
Li M; Li J; Zhang Y; Zhai Y; Chen Y; Lin L; Peng J; Zheng H; Chen J; Yan F; Lu Y
Mol Plant Pathol; 2024 Mar; 25(3):e13446. PubMed ID: 38502176
[TBL] [Abstract][Full Text] [Related]
6. CEMIG: prediction of the cis-regulatory motif using the de Bruijn graph from ATAC-seq.
Wang Y; Li Y; Wang C; Lio CJ; Ma Q; Liu B
Brief Bioinform; 2023 Nov; 25(1):. PubMed ID: 38189539
[TBL] [Abstract][Full Text] [Related]
7. Single-nuclei chromatin profiling of ventral midbrain reveals cell identity transcription factors and cell-type-specific gene regulatory variation.
Gui Y; Grzyb K; Thomas MH; Ohnmacht J; Garcia P; Buttini M; Skupin A; Sauter T; Sinkkonen L
Epigenetics Chromatin; 2021 Sep; 14(1):43. PubMed ID: 34503558
[TBL] [Abstract][Full Text] [Related]
8. Genetic variation is a key determinant of chromatin accessibility and drives differences in the regulatory landscape of C57BL/6J and 129S1/SvImJ mice.
Mononen J; Taipale M; Malinen M; Velidendla B; Niskanen E; Levonen AL; Ruotsalainen AK; Heikkinen S
Nucleic Acids Res; 2024 Apr; 52(6):2904-2923. PubMed ID: 38153160
[TBL] [Abstract][Full Text] [Related]
9. Epigenomic landscape of the human dorsal root ganglion: sex differences and transcriptional regulation of nociceptive genes.
Franco-Enzástiga Ú; Inturi NN; Natarajan K; Mwirigi JM; Mazhar K; Schlachetzki JCM; Schumacher M; Price TJ
bioRxiv; 2024 Mar; ():. PubMed ID: 38586055
[TBL] [Abstract][Full Text] [Related]
10. The landscape of chromatin accessibility in skeletal muscle during embryonic development in pigs.
Yue J; Hou X; Liu X; Wang L; Gao H; Zhao F; Shi L; Shi L; Yan H; Deng T; Gong J; Wang L; Zhang L
J Anim Sci Biotechnol; 2021 May; 12(1):56. PubMed ID: 33934724
[TBL] [Abstract][Full Text] [Related]
11. Dynamics of Chromatin Opening across Larval Development in the Urochordate Ascidian
He M; Li Y; Li Y; Dong B; Yu H
Int J Mol Sci; 2024 Feb; 25(5):. PubMed ID: 38474039
[TBL] [Abstract][Full Text] [Related]
12. Multiomics Analyses Reveal Sex Differences in Mouse Renal Proximal Subsegments.
Chen L; Chou CL; Yang CR; Knepper MA
J Am Soc Nephrol; 2023 May; 34(5):829-845. PubMed ID: 36758122
[TBL] [Abstract][Full Text] [Related]
13. A deep generative model for multi-view profiling of single-cell RNA-seq and ATAC-seq data.
Li G; Fu S; Wang S; Zhu C; Duan B; Tang C; Chen X; Chuai G; Wang P; Liu Q
Genome Biol; 2022 Jan; 23(1):20. PubMed ID: 35022082
[TBL] [Abstract][Full Text] [Related]
14. Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney.
Muto Y; Wilson PC; Ledru N; Wu H; Dimke H; Waikar SS; Humphreys BD
Nat Commun; 2021 Apr; 12(1):2190. PubMed ID: 33850129
[TBL] [Abstract][Full Text] [Related]
15. Human gene regulatory evolution is driven by the divergence of regulatory element function in both cis and trans.
Hansen TJ; Fong SL; Day JK; Capra JA; Hodges E
Cell Genom; 2024 Apr; 4(4):100536. PubMed ID: 38604126
[TBL] [Abstract][Full Text] [Related]
16. Epigenomic mapping reveals distinct B cell acute lymphoblastic leukemia chromatin architectures and regulators.
Barnett KR; Mobley RJ; Diedrich JD; Bergeron BP; Bhattarai KR; Monovich AC; Narina S; Yang W; Crews KR; Manring CS; Jabbour E; Paietta E; Litzow MR; Kornblau SM; Stock W; Inaba H; Jeha S; Pui CH; Mullighan CG; Relling MV; Pruett-Miller SM; Ryan RJH; Yang JJ; Evans WE; Savic D
Cell Genom; 2023 Dec; 3(12):100442. PubMed ID: 38116118
[TBL] [Abstract][Full Text] [Related]
17. Global chromatin landscapes identify candidate noncoding modifiers of cardiac rhythm.
Bhattacharyya S; Kollipara RK; Orquera-Tornakian G; Goetsch S; Zhang M; Perry C; Li B; Shelton JM; Bhakta M; Duan J; Xie Y; Xiao G; Evers BM; Hon GC; Kittler R; Munshi NV
J Clin Invest; 2023 Feb; 133(3):. PubMed ID: 36454649
[TBL] [Abstract][Full Text] [Related]
18. txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility.
Zhang H; Mulqueen RM; Iannuzo N; Farrera DO; Polverino F; Galligan JJ; Ledford JG; Adey AC; Cusanovich DA
Genome Biol; 2024 Mar; 25(1):78. PubMed ID: 38519979
[TBL] [Abstract][Full Text] [Related]
19. Single-cell multi-ome regression models identify functional and disease-associated enhancers and enable chromatin potential analysis.
Mitra S; Malik R; Wong W; Rahman A; Hartemink AJ; Pritykin Y; Dey KK; Leslie CS
Nat Genet; 2024 Apr; 56(4):627-636. PubMed ID: 38514783
[TBL] [Abstract][Full Text] [Related]
20. Reprogramming of cis-regulatory networks during skeletal muscle atrophy in male mice.
Lin H; Peng H; Sun Y; Si M; Wu J; Wang Y; Thomas SS; Sun Z; Hu Z
Nat Commun; 2023 Oct; 14(1):6581. PubMed ID: 37853001
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]