These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

140 related articles for article (PubMed ID: 34570515)

  • 1. Conformational Fluctuations in GTP-Bound K-Ras: A Metadynamics Perspective with Harmonic Linear Discriminant Analysis.
    Wang X
    J Chem Inf Model; 2021 Oct; 61(10):5212-5222. PubMed ID: 34570515
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The Structural Basis of Oncogenic Mutations G12, G13 and Q61 in Small GTPase K-Ras4B.
    Lu S; Jang H; Nussinov R; Zhang J
    Sci Rep; 2016 Feb; 6():21949. PubMed ID: 26902995
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Folding a small protein using harmonic linear discriminant analysis.
    Mendels D; Piccini G; Brotzakis ZF; Yang YI; Parrinello M
    J Chem Phys; 2018 Nov; 149(19):194113. PubMed ID: 30466286
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Computational analysis of KRAS mutations: implications for different effects on the KRAS p.G12D and p.G13D mutations.
    Chen CC; Er TK; Liu YY; Hwang JK; Barrio MJ; Rodrigo M; Garcia-Toro E; Herreros-Villanueva M
    PLoS One; 2013; 8(2):e55793. PubMed ID: 23437064
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Enhanced Sampling of Protein Conformational Transitions via Dynamically Optimized Collective Variables.
    Brotzakis ZF; Parrinello M
    J Chem Theory Comput; 2019 Feb; 15(2):1393-1398. PubMed ID: 30557019
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Collective Variables for Free Energy Surface Tailoring: Understanding and Modifying Functionality in Systems Dominated by Rare Events.
    Mendels D; de Pablo JJ
    J Phys Chem Lett; 2022 Mar; 13(12):2830-2837. PubMed ID: 35324208
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Characterization of the free-energy landscapes of proteins by NMR-guided metadynamics.
    Granata D; Camilloni C; Vendruscolo M; Laio A
    Proc Natl Acad Sci U S A; 2013 Apr; 110(17):6817-22. PubMed ID: 23572592
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Conformational and Dynamical Effects of Tyr32 Phosphorylation in K-Ras: Molecular Dynamics Simulation and Markov State Models Analysis.
    Khaled M; Gorfe A; Sayyed-Ahmad A
    J Phys Chem B; 2019 Sep; 123(36):7667-7675. PubMed ID: 31419909
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Predicting the conformational variability of oncogenic GTP-bound G12D mutated KRas-4B proteins at zwitterionic model cell membranes.
    Lu H; Martí J
    Nanoscale; 2022 Feb; 14(8):3148-3158. PubMed ID: 35142321
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Insight derived from molecular dynamics simulations into molecular motions, thermodynamics and kinetics of HIV-1 gp120.
    Sang P; Yang LQ; Ji XL; Fu YX; Liu SQ
    PLoS One; 2014; 9(8):e104714. PubMed ID: 25105502
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Conformational transformation of switch domains in GDP/K-Ras induced by G13 mutants: An investigation through Gaussian accelerated molecular dynamics simulations and principal component analysis.
    Chen J; Wang L; Wang W; Sun H; Pang L; Bao H
    Comput Biol Med; 2021 Aug; 135():104639. PubMed ID: 34247129
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Simple, yet powerful methodologies for conformational sampling of proteins.
    Harada R; Takano Y; Baba T; Shigeta Y
    Phys Chem Chem Phys; 2015 Mar; 17(9):6155-73. PubMed ID: 25659594
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Hierarchical Biomolecular Dynamics: Picosecond Hydrogen Bonding Regulates Microsecond Conformational Transitions.
    Buchenberg S; Schaudinnus N; Stock G
    J Chem Theory Comput; 2015 Mar; 11(3):1330-6. PubMed ID: 26579778
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Computational methods for exploring protein conformations.
    Allison JR
    Biochem Soc Trans; 2020 Aug; 48(4):1707-1724. PubMed ID: 32756904
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Comparative effects of oncogenic mutations G12C, G12V, G13D, and Q61H on local conformations and dynamics of K-Ras.
    Vatansever S; Erman B; Gümüş ZH
    Comput Struct Biotechnol J; 2020; 18():1000-1011. PubMed ID: 32373288
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The Importance of Mg
    Pálfy G; Menyhárd DK; Ákontz-Kiss H; Vida I; Batta G; Tőke O; Perczel A
    Chemistry; 2022 Oct; 28(59):e202201449. PubMed ID: 35781716
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A metadynamics perspective on the reduction mechanism of the Pt(IV) asplatin prodrug.
    Ponte F; Piccini G; Sicilia E; Parrinello M
    J Comput Chem; 2020 Feb; 41(4):290-294. PubMed ID: 31691997
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Enhanced sampling and free energy calculations for protein simulations.
    Liao Q
    Prog Mol Biol Transl Sci; 2020; 170():177-213. PubMed ID: 32145945
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Molecular dynamics simulations reveal distinct differences in conformational dynamics and thermodynamics between the unliganded and CD4-bound states of HIV-1 gp120.
    Li Y; Deng L; Liang J; Dong GH; Xia YL; Fu YX; Liu SQ
    Phys Chem Chem Phys; 2020 Mar; 22(10):5548-5560. PubMed ID: 32119016
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Impacts of Mutations in the P-Loop on Conformational Alterations of KRAS Investigated with Gaussian Accelerated Molecular Dynamics Simulations.
    Shi S; Zheng L; Ren Y; Wang Z
    Molecules; 2023 Mar; 28(7):. PubMed ID: 37049650
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.