BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

211 related articles for article (PubMed ID: 34570758)

  • 41. systemPipeR: NGS workflow and report generation environment.
    H Backman TW; Girke T
    BMC Bioinformatics; 2016 Sep; 17():388. PubMed ID: 27650223
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Differential motif enrichment analysis of paired ChIP-seq experiments.
    Lesluyes T; Johnson J; Machanick P; Bailey TL
    BMC Genomics; 2014 Sep; 15(1):752. PubMed ID: 25179504
    [TBL] [Abstract][Full Text] [Related]  

  • 43. BatchQC: interactive software for evaluating sample and batch effects in genomic data.
    Manimaran S; Selby HM; Okrah K; Ruberman C; Leek JT; Quackenbush J; Haibe-Kains B; Bravo HC; Johnson WE
    Bioinformatics; 2016 Dec; 32(24):3836-3838. PubMed ID: 27540268
    [TBL] [Abstract][Full Text] [Related]  

  • 44. GenomicDistributions: fast analysis of genomic intervals with Bioconductor.
    Kupkova K; Mosquera JV; Smith JP; Stolarczyk M; Danehy TL; Lawson JT; Xue B; Stubbs JT; LeRoy N; Sheffield NC
    BMC Genomics; 2022 Apr; 23(1):299. PubMed ID: 35413804
    [TBL] [Abstract][Full Text] [Related]  

  • 45. An integrated toolkit for accurate prediction and analysis of cis-regulatory motifs at a genome scale.
    Ma Q; Liu B; Zhou C; Yin Y; Li G; Xu Y
    Bioinformatics; 2013 Sep; 29(18):2261-8. PubMed ID: 23846744
    [TBL] [Abstract][Full Text] [Related]  

  • 46. SAROTUP: a suite of tools for finding potential target-unrelated peptides from phage display data.
    He B; Chen H; Li N; Huang J
    Int J Biol Sci; 2019; 15(7):1452-1459. PubMed ID: 31337975
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Crunch: integrated processing and modeling of ChIP-seq data in terms of regulatory motifs.
    Berger S; Pachkov M; Arnold P; Omidi S; Kelley N; Salatino S; van Nimwegen E
    Genome Res; 2019 Jul; 29(7):1164-1177. PubMed ID: 31138617
    [TBL] [Abstract][Full Text] [Related]  

  • 48. GRcalculator: an online tool for calculating and mining dose-response data.
    Clark NA; Hafner M; Kouril M; Williams EH; Muhlich JL; Pilarczyk M; Niepel M; Sorger PK; Medvedovic M
    BMC Cancer; 2017 Oct; 17(1):698. PubMed ID: 29065900
    [TBL] [Abstract][Full Text] [Related]  

  • 49. W-ChIPMotifs: a web application tool for de novo motif discovery from ChIP-based high-throughput data.
    Jin VX; Apostolos J; Nagisetty NS; Farnham PJ
    Bioinformatics; 2009 Dec; 25(23):3191-3. PubMed ID: 19797408
    [TBL] [Abstract][Full Text] [Related]  

  • 50. missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform.
    Phipson B; Maksimovic J; Oshlack A
    Bioinformatics; 2016 Jan; 32(2):286-8. PubMed ID: 26424855
    [TBL] [Abstract][Full Text] [Related]  

  • 51. TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data.
    Su W; Sun J; Shimizu K; Kadota K
    BMC Res Notes; 2019 Mar; 12(1):133. PubMed ID: 30867032
    [TBL] [Abstract][Full Text] [Related]  

  • 52. EXTREME: an online EM algorithm for motif discovery.
    Quang D; Xie X
    Bioinformatics; 2014 Jun; 30(12):1667-73. PubMed ID: 24532725
    [TBL] [Abstract][Full Text] [Related]  

  • 53. HTSanalyzeR: an R/Bioconductor package for integrated network analysis of high-throughput screens.
    Wang X; Terfve C; Rose JC; Markowetz F
    Bioinformatics; 2011 Mar; 27(6):879-80. PubMed ID: 21258062
    [TBL] [Abstract][Full Text] [Related]  

  • 54. PaxtoolsR: pathway analysis in R using Pathway Commons.
    Luna A; Babur Ö; Aksoy BA; Demir E; Sander C
    Bioinformatics; 2016 Apr; 32(8):1262-4. PubMed ID: 26685306
    [TBL] [Abstract][Full Text] [Related]  

  • 55. APOSTL: An Interactive Galaxy Pipeline for Reproducible Analysis of Affinity Proteomics Data.
    Kuenzi BM; Borne AL; Li J; Haura EB; Eschrich SA; Koomen JM; Rix U; Stewart PA
    J Proteome Res; 2016 Dec; 15(12):4747-4754. PubMed ID: 27680298
    [TBL] [Abstract][Full Text] [Related]  

  • 56. DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data.
    Saad C; Noé L; Richard H; Leclerc J; Buisine MP; Touzet H; Figeac M
    BMC Bioinformatics; 2018 Jun; 19(1):223. PubMed ID: 29890948
    [TBL] [Abstract][Full Text] [Related]  

  • 57. GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases.
    Zhu LJ; Lawrence M; Gupta A; Pagès H; Kucukural A; Garber M; Wolfe SA
    BMC Genomics; 2017 May; 18(1):379. PubMed ID: 28506212
    [TBL] [Abstract][Full Text] [Related]  

  • 58. BGData - A Suite of R Packages for Genomic Analysis with Big Data.
    Grueneberg A; de Los Campos G
    G3 (Bethesda); 2019 May; 9(5):1377-1383. PubMed ID: 30894453
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Enhancing the student learning experience through memes.
    Tidy H; Bolton-King RS; Croxton R; Mullen C; Nichols-Drew L; Carlysle-Davies F; Moran KS; Irving-Walton J
    Sci Justice; 2024 May; 64(3):280-288. PubMed ID: 38735664
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Using R and Bioconductor in Clinical Genomics and Transcriptomics.
    Sepulveda JL
    J Mol Diagn; 2020 Jan; 22(1):3-20. PubMed ID: 31605800
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.