200 related articles for article (PubMed ID: 34572544)
1. Recognition Interface of the Thrombin Binding Aptamer Requires Antiparallel Topology of the Quadruplex Core.
Svetlova J; Sardushkin M; Kolganova N; Timofeev E
Biomolecules; 2021 Sep; 11(9):. PubMed ID: 34572544
[TBL] [Abstract][Full Text] [Related]
2. Alpha-Deoxyguanosine to Reshape the Alpha-Thrombin Binding Aptamer.
Kolganova NA; Tsvetkov VB; Stomakhin AA; Surzhikov SA; Timofeev EN; Varizhuk IV
Int J Mol Sci; 2023 May; 24(9):. PubMed ID: 37176113
[TBL] [Abstract][Full Text] [Related]
3. Improving the Biological Properties of Thrombin-Binding Aptamer by Incorporation of 8-Bromo-2'-Deoxyguanosine and 2'-Substituted RNA Analogues.
Virgilio A; Benigno D; Aliberti C; Vellecco V; Bucci M; Esposito V; Galeone A
Int J Mol Sci; 2023 Oct; 24(21):. PubMed ID: 37958511
[TBL] [Abstract][Full Text] [Related]
4. Manipulation of a DNA aptamer-protein binding site through arylation of internal guanine residues.
Van Riesen AJ; Fadock KL; Deore PS; Desoky A; Manderville RA; Sowlati-Hashjin S; Wetmore SD
Org Biomol Chem; 2018 May; 16(20):3831-3840. PubMed ID: 29745412
[TBL] [Abstract][Full Text] [Related]
5. Probing the Nitroindole-Modified Central Loop of Thrombin Aptamer HD1 as a Recognition Site.
Kolganova NA; Tsvetkov VB; Smirnov IP; Timofeev EN
Nucleic Acid Ther; 2019 Aug; 29(4):208-217. PubMed ID: 30864877
[TBL] [Abstract][Full Text] [Related]
6. Cation Coordination Alters the Conformation of a Thrombin-Binding G-Quadruplex DNA Aptamer That Affects Inhibition of Thrombin.
Zavyalova E; Tagiltsev G; Reshetnikov R; Arutyunyan A; Kopylov A
Nucleic Acid Ther; 2016 Oct; 26(5):299-308. PubMed ID: 27159247
[TBL] [Abstract][Full Text] [Related]
7. Optimization of fluorescent 8-heteroaryl-guanine probes for monitoring protein-mediated duplex → G-quadruplex exchange.
Fadock KL; Manderville RA; Sharma P; Wetmore SD
Org Biomol Chem; 2016 May; 14(19):4409-19. PubMed ID: 27040462
[TBL] [Abstract][Full Text] [Related]
8. Lighting Up the Thrombin-Binding Aptamer G-Quadruplex with an Internal Cyanine-Indole-Quinolinium Nucleobase Surrogate. Direct Fluorescent Intensity Readout for Thrombin Binding without Topology Switching.
Gray MD; Deore PS; Chung AJ; Van Riesen AJ; Manderville RA; Prabhakar PS; Wetmore SD
Bioconjug Chem; 2020 Nov; 31(11):2596-2606. PubMed ID: 33156614
[TBL] [Abstract][Full Text] [Related]
9. Dissecting the contribution of thrombin exosite I in the recognition of thrombin binding aptamer.
Pica A; Russo Krauss I; Merlino A; Nagatoishi S; Sugimoto N; Sica F
FEBS J; 2013 Dec; 280(24):6581-8. PubMed ID: 24128303
[TBL] [Abstract][Full Text] [Related]
10. A double chain reversal loop and two diagonal loops define the architecture of a unimolecular DNA quadruplex containing a pair of stacked G(syn)-G(syn)-G(anti)-G(anti) tetrads flanked by a G-(T-T) Triad and a T-T-T triple.
Kuryavyi V; Majumdar A; Shallop A; Chernichenko N; Skripkin E; Jones R; Patel DJ
J Mol Biol; 2001 Jun; 310(1):181-94. PubMed ID: 11419945
[TBL] [Abstract][Full Text] [Related]
11. The effect of l-thymidine, acyclic thymine and 8-bromoguanine on the stability of model G-quadruplex structures.
Aviñó A; Mazzini S; Fàbrega C; Peñalver P; Gargallo R; Morales JC; Eritja R
Biochim Biophys Acta Gen Subj; 2017 May; 1861(5 Pt B):1205-1212. PubMed ID: 27705754
[TBL] [Abstract][Full Text] [Related]
12. Binding mode of a cationic porphyrin to parallel and antiparallel thrombin binding aptamer G-quadruplex.
Cho HY; Lee YA; Oh YS; Lee GJ; Jang YJ; Kim SK
J Biomol Struct Dyn; 2020 Jun; 38(9):2686-2692. PubMed ID: 31307279
[TBL] [Abstract][Full Text] [Related]
13. Thermodynamics and Kinetics of Unfolding of Antiparallel G-Quadruplexes in Anti-Thrombin Aptamers.
Spiridonova VA; Naumova YO; Nikolaeva PA; Novikova TM; Kolomijtseva GY
Biochemistry (Mosc); 2022 Nov; 87(11):1292-1300. PubMed ID: 36509716
[TBL] [Abstract][Full Text] [Related]
14. Coexistence of G-quadruplex and duplex domains within the secondary structure of 31-mer DNA thrombin-binding aptamer.
Dolinnaya NG; Yuminova AV; Spiridonova VA; Arutyunyan AM; Kopylov AM
J Biomol Struct Dyn; 2012; 30(5):524-31. PubMed ID: 22734515
[TBL] [Abstract][Full Text] [Related]
15. Anomeric DNA quadruplexes.
Kolganova NA; Varizhuk AM; Novikov RA; Florentiev VL; Pozmogova GE; Borisova OF; Shchyolkina AK; Smirnov IP; Kaluzhny DN; Timofeev EN
Artif DNA PNA XNA; 2014; 5(2):e28422. PubMed ID: 25483931
[TBL] [Abstract][Full Text] [Related]
16. Interaction of water with the G-quadruplex loop contributes to the binding energy of G-quadruplex to protein.
Nagatoishi S; Sugimoto N
Mol Biosyst; 2012 Oct; 8(10):2766-70. PubMed ID: 22851057
[TBL] [Abstract][Full Text] [Related]
17. Harnessing G-tetrad scaffolds within G-quadruplex forming aptamers for fluorescence detection strategies.
Sproviero M; Manderville RA
Chem Commun (Camb); 2014 Mar; 50(23):3097-9. PubMed ID: 24513595
[TBL] [Abstract][Full Text] [Related]
18. Improving Thermodynamic Stability and Anticoagulant Activity of a Thrombin Binding Aptamer by Incorporation of 8-trifluoromethyl-2'-deoxyguanosine.
Bao HL; Ishizuka T; Yamashita A; Furukoji E; Asada Y; Xu Y
J Med Chem; 2021 Jan; 64(1):711-718. PubMed ID: 33289557
[TBL] [Abstract][Full Text] [Related]
19. Light-controlled thrombin catalysis and clot formation using a photoswitchable G-quadruplex DNA aptamer.
Ali A; Bullen GA; Cross B; Dafforn TR; Little HA; Manchester J; Peacock AFA; Tucker JHR
Chem Commun (Camb); 2019 May; 55(39):5627-5630. PubMed ID: 31025680
[TBL] [Abstract][Full Text] [Related]
20. Specific loop modifications of the thrombin-binding aptamer trigger the formation of parallel structures.
Aviñó A; Portella G; Ferreira R; Gargallo R; Mazzini S; Gabelica V; Orozco M; Eritja R
FEBS J; 2014 Feb; 281(4):1085-99. PubMed ID: 24304855
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]