180 related articles for article (PubMed ID: 34599831)
1. DisCovER: distance- and orientation-based covariational threading for weakly homologous proteins.
Bhattacharya S; Roche R; Moussad B; Bhattacharya D
Proteins; 2022 Feb; 90(2):579-588. PubMed ID: 34599831
[TBL] [Abstract][Full Text] [Related]
2. Does inclusion of residue-residue contact information boost protein threading?
Bhattacharya S; Bhattacharya D
Proteins; 2019 Jul; 87(7):596-606. PubMed ID: 30882932
[TBL] [Abstract][Full Text] [Related]
3. Template-based prediction of protein structure with deep learning.
Zhang H; Shen Y
BMC Genomics; 2020 Dec; 21(Suppl 11):878. PubMed ID: 33372607
[TBL] [Abstract][Full Text] [Related]
4. Protein threading using residue co-variation and deep learning.
Zhu J; Wang S; Bu D; Xu J
Bioinformatics; 2018 Jul; 34(13):i263-i273. PubMed ID: 29949980
[TBL] [Abstract][Full Text] [Related]
5. Contact-Assisted Threading in Low-Homology Protein Modeling.
Bhattacharya S; Roche R; Shuvo MH; Moussad B; Bhattacharya D
Methods Mol Biol; 2023; 2627():41-59. PubMed ID: 36959441
[TBL] [Abstract][Full Text] [Related]
6. ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs.
Kong L; Ju F; Zheng WM; Zhu J; Sun S; Xu J; Bu D
J Comput Biol; 2022 Feb; 29(2):92-105. PubMed ID: 35073170
[TBL] [Abstract][Full Text] [Related]
7. Detecting distant-homology protein structures by aligning deep neural-network based contact maps.
Zheng W; Wuyun Q; Li Y; Mortuza SM; Zhang C; Pearce R; Ruan J; Zhang Y
PLoS Comput Biol; 2019 Oct; 15(10):e1007411. PubMed ID: 31622328
[TBL] [Abstract][Full Text] [Related]
8. Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm.
Skolnick J; Kihara D; Zhang Y
Proteins; 2004 Aug; 56(3):502-18. PubMed ID: 15229883
[TBL] [Abstract][Full Text] [Related]
9. Incorporating Ab Initio energy into threading approaches for protein structure prediction.
Shao M; Wang S; Wang C; Yuan X; Li SC; Zheng W; Bu D
BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S54. PubMed ID: 21342587
[TBL] [Abstract][Full Text] [Related]
10. Low-homology protein threading.
Peng J; Xu J
Bioinformatics; 2010 Jun; 26(12):i294-300. PubMed ID: 20529920
[TBL] [Abstract][Full Text] [Related]
11. Improving protein tertiary structure prediction by deep learning and distance prediction in CASP14.
Liu J; Wu T; Guo Z; Hou J; Cheng J
Proteins; 2022 Jan; 90(1):58-72. PubMed ID: 34291486
[TBL] [Abstract][Full Text] [Related]
12. Protein threading using context-specific alignment potential.
Ma J; Wang S; Zhao F; Xu J
Bioinformatics; 2013 Jul; 29(13):i257-65. PubMed ID: 23812991
[TBL] [Abstract][Full Text] [Related]
13. A multiple-template approach to protein threading.
Peng J; Xu J
Proteins; 2011 Jun; 79(6):1930-9. PubMed ID: 21465564
[TBL] [Abstract][Full Text] [Related]
14. Protein threading with profiles and distance constraints using clique based algorithms.
Dukka BK; Tomita E; Suzuki J; Horimoto K; Akutsu T
J Bioinform Comput Biol; 2006 Feb; 4(1):19-42. PubMed ID: 16568540
[TBL] [Abstract][Full Text] [Related]
15. FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition.
Wang C; Zhang H; Zheng WM; Xu D; Zhu J; Wang B; Ning K; Sun S; Li SC; Bu D
Bioinformatics; 2016 Feb; 32(3):462-4. PubMed ID: 26454278
[TBL] [Abstract][Full Text] [Related]
16. Recent Advances in Protein Homology Detection Propelled by Inter-Residue Interaction Map Threading.
Bhattacharya S; Roche R; Shuvo MH; Bhattacharya D
Front Mol Biosci; 2021; 8():643752. PubMed ID: 34046429
[TBL] [Abstract][Full Text] [Related]
17. Protein fold recognition by prediction-based threading.
Rost B; Schneider R; Sander C
J Mol Biol; 1997 Jul; 270(3):471-80. PubMed ID: 9237912
[TBL] [Abstract][Full Text] [Related]
18. Template-based protein structure prediction in CASP11 and retrospect of I-TASSER in the last decade.
Yang J; Zhang W; He B; Walker SE; Zhang H; Govindarajoo B; Virtanen J; Xue Z; Shen HB; Zhang Y
Proteins; 2016 Sep; 84 Suppl 1(Suppl 1):233-46. PubMed ID: 26343917
[TBL] [Abstract][Full Text] [Related]
19. eThread: a highly optimized machine learning-based approach to meta-threading and the modeling of protein tertiary structures.
Brylinski M; Lingam D
PLoS One; 2012; 7(11):e50200. PubMed ID: 23185577
[TBL] [Abstract][Full Text] [Related]
20. THE-DB: a threading model database for comparative protein structure analysis of the E. coli K12 and human proteomes.
Diamond JS; Zhang Y
Database (Oxford); 2018 Jan; 2018():. PubMed ID: 30239678
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
