These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

111 related articles for article (PubMed ID: 34601580)

  • 21. Sequence tube maps: making graph genomes intuitive to commuters.
    Beyer W; Novak AM; Hickey G; Chan J; Tan V; Paten B; Zerbino DR
    Bioinformatics; 2019 Dec; 35(24):5318-5320. PubMed ID: 31368484
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Phylogenetic double placement of mixed samples.
    Balaban M; Mirarab S
    Bioinformatics; 2020 Jul; 36(Suppl_1):i335-i343. PubMed ID: 32657414
    [TBL] [Abstract][Full Text] [Related]  

  • 23. AliView: a fast and lightweight alignment viewer and editor for large datasets.
    Larsson A
    Bioinformatics; 2014 Nov; 30(22):3276-8. PubMed ID: 25095880
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Mingle: A Command Line Utility for Merging Multi-fasta Files.
    Marongiu L; Allgayer H
    J Comput Biol; 2019 Apr; 26(4):396-404. PubMed ID: 30762421
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Founder reconstruction enables scalable and seamless pangenomic analysis.
    Norri T; Cazaux B; Dönges S; Valenzuela D; Mäkinen V
    Bioinformatics; 2021 Dec; 37(24):4611-4619. PubMed ID: 34260702
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Methods for automatic reference trees and multilevel phylogenetic placement.
    Czech L; Barbera P; Stamatakis A
    Bioinformatics; 2019 Apr; 35(7):1151-1158. PubMed ID: 30169747
    [TBL] [Abstract][Full Text] [Related]  

  • 27. OMAmer: tree-driven and alignment-free protein assignment to subfamilies outperforms closest sequence approaches.
    Rossier V; Warwick Vesztrocy A; Robinson-Rechavi M; Dessimoz C
    Bioinformatics; 2021 Sep; 37(18):2866-2873. PubMed ID: 33787851
    [TBL] [Abstract][Full Text] [Related]  

  • 28. seq-seq-pan: building a computational pan-genome data structure on whole genome alignment.
    Jandrasits C; Dabrowski PW; Fuchs S; Renard BY
    BMC Genomics; 2018 Jan; 19(1):47. PubMed ID: 29334898
    [TBL] [Abstract][Full Text] [Related]  

  • 29. PEWO: a collection of workflows to benchmark phylogenetic placement.
    Linard B; Romashchenko N; Pardi F; Rivals E
    Bioinformatics; 2021 Jan; 36(21):5264-5266. PubMed ID: 32697844
    [TBL] [Abstract][Full Text] [Related]  

  • 30. MetaSanity: an integrated microbial genome evaluation and annotation pipeline.
    Neely CJ; Graham ED; Tully BJ
    Bioinformatics; 2020 Aug; 36(15):4341-4344. PubMed ID: 32426808
    [TBL] [Abstract][Full Text] [Related]  

  • 31. LMAP_S: Lightweight Multigene Alignment and Phylogeny eStimation.
    Maldonado E; Antunes A
    BMC Bioinformatics; 2019 Dec; 20(1):739. PubMed ID: 31888452
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Zombi: a phylogenetic simulator of trees, genomes and sequences that accounts for dead linages.
    Davín AA; Tricou T; Tannier E; de Vienne DM; Szöllősi GJ
    Bioinformatics; 2020 Feb; 36(4):1286-1288. PubMed ID: 31566657
    [TBL] [Abstract][Full Text] [Related]  

  • 33. T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life.
    Carbone I; White JB; Miadlikowska J; Arnold AE; Miller MA; Kauff F; U'Ren JM; May G; Lutzoni F
    Bioinformatics; 2017 Apr; 33(8):1160-1168. PubMed ID: 28003260
    [TBL] [Abstract][Full Text] [Related]  

  • 34. TREEasy: An automated workflow to infer gene trees, species trees, and phylogenetic networks from multilocus data.
    Mao Y; Hou S; Shi J; Economo EP
    Mol Ecol Resour; 2020 May; 20(3):. PubMed ID: 32073732
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Fast detection of maximal exact matches via fixed sampling of query K-mers and Bloom filtering of index K-mers.
    Liu Y; Zhang LY; Li J
    Bioinformatics; 2019 Nov; 35(22):4560-4567. PubMed ID: 30994891
    [TBL] [Abstract][Full Text] [Related]  

  • 36. A Bayesian taxonomic classification method for 16S rRNA gene sequences with improved species-level accuracy.
    Gao X; Lin H; Revanna K; Dong Q
    BMC Bioinformatics; 2017 May; 18(1):247. PubMed ID: 28486927
    [TBL] [Abstract][Full Text] [Related]  

  • 37. SEDA: A Desktop Tool Suite for FASTA Files Processing.
    Lopez-Fernandez H; Duque P; Vazquez N; Fdez-Riverola F; Reboiro-Jato M; Vieira CP; Vieira J
    IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(3):1850-1860. PubMed ID: 33237866
    [TBL] [Abstract][Full Text] [Related]  

  • 38. PyMod 3: a complete suite for structural bioinformatics in PyMOL.
    Janson G; Paiardini A
    Bioinformatics; 2021 Jun; 37(10):1471-1472. PubMed ID: 33010156
    [TBL] [Abstract][Full Text] [Related]  

  • 39. MMseqs software suite for fast and deep clustering and searching of large protein sequence sets.
    Hauser M; Steinegger M; Söding J
    Bioinformatics; 2016 May; 32(9):1323-30. PubMed ID: 26743509
    [TBL] [Abstract][Full Text] [Related]  

  • 40. LevioSAM: fast lift-over of variant-aware reference alignments.
    Mun T; Chen NC; Langmead B
    Bioinformatics; 2021 Nov; 37(22):4243-4245. PubMed ID: 34037690
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.