BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

209 related articles for article (PubMed ID: 34606413)

  • 21. Leveraging cross-link modification events in CLIP-seq for motif discovery.
    Bahrami-Samani E; Penalva LO; Smith AD; Uren PJ
    Nucleic Acids Res; 2015 Jan; 43(1):95-103. PubMed ID: 25505146
    [TBL] [Abstract][Full Text] [Related]  

  • 22. RNA Sequence Context Effects Measured In Vitro Predict In Vivo Protein Binding and Regulation.
    Taliaferro JM; Lambert NJ; Sudmant PH; Dominguez D; Merkin JJ; Alexis MS; Bazile C; Burge CB
    Mol Cell; 2016 Oct; 64(2):294-306. PubMed ID: 27720642
    [TBL] [Abstract][Full Text] [Related]  

  • 23. PureCLIP: capturing target-specific protein-RNA interaction footprints from single-nucleotide CLIP-seq data.
    Krakau S; Richard H; Marsico A
    Genome Biol; 2017 Dec; 18(1):240. PubMed ID: 29284540
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Structure-based analysis of protein-RNA interactions using the program ENTANGLE.
    Allers J; Shamoo Y
    J Mol Biol; 2001 Aug; 311(1):75-86. PubMed ID: 11469858
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Exploring Consensus RNA Substructural Patterns Using Subgraph Mining.
    Chen Q; Lan C; Chen B; Wang L; Li J; Zhang C
    IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(5):1134-1146. PubMed ID: 28026781
    [TBL] [Abstract][Full Text] [Related]  

  • 26. RBPmotif: a web server for the discovery of sequence and structure preferences of RNA-binding proteins.
    Kazan H; Morris Q
    Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W180-6. PubMed ID: 23754853
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Struct-NB: predicting protein-RNA binding sites using structural features.
    Towfic F; Caragea C; Gemperline DC; Dobbs D; Honavar V
    Int J Data Min Bioinform; 2010; 4(1):21-43. PubMed ID: 20300450
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Integrated structural biology to unravel molecular mechanisms of protein-RNA recognition.
    Schlundt A; Tants JN; Sattler M
    Methods; 2017 Apr; 118-119():119-136. PubMed ID: 28315749
    [TBL] [Abstract][Full Text] [Related]  

  • 29. A method for aligning RNA secondary structures and its application to RNA motif detection.
    Liu J; Wang JT; Hu J; Tian B
    BMC Bioinformatics; 2005 Apr; 6():89. PubMed ID: 15817128
    [TBL] [Abstract][Full Text] [Related]  

  • 30. RNA Footprinting Using Small Chemical Reagents.
    De Bisschop G; Sargueil B
    Methods Mol Biol; 2021; 2323():13-23. PubMed ID: 34086270
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Finding RNA structure in the unstructured RBPome.
    Orenstein Y; Ohler U; Berger B
    BMC Genomics; 2018 Feb; 19(1):154. PubMed ID: 29463232
    [TBL] [Abstract][Full Text] [Related]  

  • 32. SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes.
    Brannan KW; Jin W; Huelga SC; Banks CA; Gilmore JM; Florens L; Washburn MP; Van Nostrand EL; Pratt GA; Schwinn MK; Daniels DL; Yeo GW
    Mol Cell; 2016 Oct; 64(2):282-293. PubMed ID: 27720645
    [TBL] [Abstract][Full Text] [Related]  

  • 33. DO-RIP-seq to quantify RNA binding sites transcriptome-wide.
    Nicholson CO; Friedersdorf MB; Bisogno LS; Keene JD
    Methods; 2017 Apr; 118-119():16-23. PubMed ID: 27840290
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Dynamic changes in RNA-protein interactions and RNA secondary structure in mammalian erythropoiesis.
    Shan M; Ji X; Janssen K; Silverman IM; Humenik J; Garcia BA; Liebhaber SA; Gregory BD
    Life Sci Alliance; 2021 Sep; 4(9):. PubMed ID: 34315813
    [TBL] [Abstract][Full Text] [Related]  

  • 35. StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo.
    Tang Y; Bouvier E; Kwok CK; Ding Y; Nekrutenko A; Bevilacqua PC; Assmann SM
    Bioinformatics; 2015 Aug; 31(16):2668-75. PubMed ID: 25886980
    [TBL] [Abstract][Full Text] [Related]  

  • 36. beRBP: binding estimation for human RNA-binding proteins.
    Yu H; Wang J; Sheng Q; Liu Q; Shyr Y
    Nucleic Acids Res; 2019 Mar; 47(5):e26. PubMed ID: 30590704
    [TBL] [Abstract][Full Text] [Related]  

  • 37. StructureFold2: Bringing chemical probing data into the computational fold of RNA structural analysis.
    Tack DC; Tang Y; Ritchey LE; Assmann SM; Bevilacqua PC
    Methods; 2018 Jul; 143():12-15. PubMed ID: 29410279
    [TBL] [Abstract][Full Text] [Related]  

  • 38. iDRBP_MMC: Identifying DNA-Binding Proteins and RNA-Binding Proteins Based on Multi-Label Learning Model and Motif-Based Convolutional Neural Network.
    Zhang J; Chen Q; Liu B
    J Mol Biol; 2020 Nov; 432(22):5860-5875. PubMed ID: 32920048
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Experimental and Computational Considerations in the Study of RNA-Binding Protein-RNA Interactions.
    Van Nostrand EL; Huelga SC; Yeo GW
    Adv Exp Med Biol; 2016; 907():1-28. PubMed ID: 27256380
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments.
    Selega A; Sirocchi C; Iosub I; Granneman S; Sanguinetti G
    Nat Methods; 2017 Jan; 14(1):83-89. PubMed ID: 27819660
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.