222 related articles for article (PubMed ID: 34606462)
1. K2Mem: Discovering Discriminative K-mers From Sequencing Data for Metagenomic Reads Classification.
Storato D; Comin M
IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(1):220-229. PubMed ID: 34606462
[TBL] [Abstract][Full Text] [Related]
2. ClassGraph: Improving Metagenomic Read Classification with Overlap Graphs.
Cavattoni M; Comin M
J Comput Biol; 2023 Jun; 30(6):633-647. PubMed ID: 37023405
[TBL] [Abstract][Full Text] [Related]
3. Estimating the total genome length of a metagenomic sample using k-mers.
Hua K; Zhang X
BMC Genomics; 2019 Apr; 20(Suppl 2):183. PubMed ID: 30967110
[TBL] [Abstract][Full Text] [Related]
4. MSC: a metagenomic sequence classification algorithm.
Saha S; Johnson J; Pal S; Weinstock GM; Rajasekaran S
Bioinformatics; 2019 Sep; 35(17):2932-2940. PubMed ID: 30649204
[TBL] [Abstract][Full Text] [Related]
5. MetaCache: context-aware classification of metagenomic reads using minhashing.
Müller A; Hundt C; Hildebrandt A; Hankeln T; Schmidt B
Bioinformatics; 2017 Dec; 33(23):3740-3748. PubMed ID: 28961782
[TBL] [Abstract][Full Text] [Related]
6. MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures.
Girotto S; Pizzi C; Comin M
Bioinformatics; 2016 Sep; 32(17):i567-i575. PubMed ID: 27587676
[TBL] [Abstract][Full Text] [Related]
7. Fast Approximation of Frequent
Pellegrina L; Pizzi C; Vandin F
J Comput Biol; 2020 Apr; 27(4):534-549. PubMed ID: 31891535
[TBL] [Abstract][Full Text] [Related]
8. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
9. MetaObtainer: A Tool for Obtaining Specified Species from Metagenomic Reads of Next-generation Sequencing.
Pan W; Chen B; Xu Y
Interdiscip Sci; 2015 Dec; 7(4):405-13. PubMed ID: 26293485
[TBL] [Abstract][Full Text] [Related]
10. Accelerating metagenomic read classification on CUDA-enabled GPUs.
Kobus R; Hundt C; Müller A; Schmidt B
BMC Bioinformatics; 2017 Jan; 18(1):11. PubMed ID: 28049411
[TBL] [Abstract][Full Text] [Related]
11. Sketching and sampling approaches for fast and accurate long read classification.
Das A; Schatz MC
BMC Bioinformatics; 2022 Oct; 23(1):452. PubMed ID: 36316646
[TBL] [Abstract][Full Text] [Related]
12. Exploiting topic modeling to boost metagenomic reads binning.
Zhang R; Cheng Z; Guan J; Zhou S
BMC Bioinformatics; 2015; 16 Suppl 5(Suppl 5):S2. PubMed ID: 25859745
[TBL] [Abstract][Full Text] [Related]
13. Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps.
Dilthey AT; Jain C; Koren S; Phillippy AM
Nat Commun; 2019 Jul; 10(1):3066. PubMed ID: 31296857
[TBL] [Abstract][Full Text] [Related]
14. ViraPipe: scalable parallel pipeline for viral metagenome analysis from next generation sequencing reads.
Maarala AI; Bzhalava Z; Dillner J; Heljanko K; Bzhalava D
Bioinformatics; 2018 Mar; 34(6):928-935. PubMed ID: 29106455
[TBL] [Abstract][Full Text] [Related]
15. SPRISS: approximating frequent k-mers by sampling reads, and applications.
Santoro D; Pellegrina L; Comin M; Vandin F
Bioinformatics; 2022 Jun; 38(13):3343-3350. PubMed ID: 35583271
[TBL] [Abstract][Full Text] [Related]
16. Large scale microbiome profiling in the cloud.
Valdes C; Stebliankin V; Narasimhan G
Bioinformatics; 2019 Jul; 35(14):i13-i22. PubMed ID: 31510682
[TBL] [Abstract][Full Text] [Related]
17. MetaSpark: a spark-based distributed processing tool to recruit metagenomic reads to reference genomes.
Zhou W; Li R; Yuan S; Liu C; Yao S; Luo J; Niu B
Bioinformatics; 2017 Apr; 33(7):1090-1092. PubMed ID: 28065898
[TBL] [Abstract][Full Text] [Related]
18. Mora: abundance aware metagenomic read re-assignment for disentangling similar strains.
Zheng A; Shaw J; Yu YW
BMC Bioinformatics; 2024 Apr; 25(1):161. PubMed ID: 38649836
[TBL] [Abstract][Full Text] [Related]
19. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.
Rotimi AM; Pierneef R; Reva ON
BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813
[TBL] [Abstract][Full Text] [Related]
20. Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences.
Wang Z; Wang Y; Fuhrman JA; Sun F; Zhu S
Brief Bioinform; 2020 May; 21(3):777-790. PubMed ID: 30860572
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]