BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

367 related articles for article (PubMed ID: 34616068)

  • 1. An atlas of gene regulatory elements in adult mouse cerebrum.
    Li YE; Preissl S; Hou X; Zhang Z; Zhang K; Qiu Y; Poirion OB; Li B; Chiou J; Liu H; Pinto-Duarte A; Kubo N; Yang X; Fang R; Wang X; Han JY; Lucero J; Yan Y; Miller M; Kuan S; Gorkin D; Gaulton KJ; Shen Y; Nunn M; Mukamel EA; Behrens MM; Ecker JR; Ren B
    Nature; 2021 Oct; 598(7879):129-136. PubMed ID: 34616068
    [TBL] [Abstract][Full Text] [Related]  

  • 2. DNA methylation atlas of the mouse brain at single-cell resolution.
    Liu H; Zhou J; Tian W; Luo C; Bartlett A; Aldridge A; Lucero J; Osteen JK; Nery JR; Chen H; Rivkin A; Castanon RG; Clock B; Li YE; Hou X; Poirion OB; Preissl S; Pinto-Duarte A; O'Connor C; Boggeman L; Fitzpatrick C; Nunn M; Mukamel EA; Zhang Z; Callaway EM; Ren B; Dixon JR; Behrens MM; Ecker JR
    Nature; 2021 Oct; 598(7879):120-128. PubMed ID: 34616061
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A comparative atlas of single-cell chromatin accessibility in the human brain.
    Li YE; Preissl S; Miller M; Johnson ND; Wang Z; Jiao H; Zhu C; Wang Z; Xie Y; Poirion O; Kern C; Pinto-Duarte A; Tian W; Siletti K; Emerson N; Osteen J; Lucero J; Lin L; Yang Q; Zhu Q; Zemke N; Espinoza S; Yanny AM; Nyhus J; Dee N; Casper T; Shapovalova N; Hirschstein D; Hodge RD; Linnarsson S; Bakken T; Levi B; Keene CD; Shang J; Lein E; Wang A; Behrens MM; Ecker JR; Ren B
    Science; 2023 Oct; 382(6667):eadf7044. PubMed ID: 37824643
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Single-cell analysis of chromatin accessibility in the adult mouse brain.
    Zu S; Li YE; Wang K; Armand EJ; Mamde S; Amaral ML; Wang Y; Chu A; Xie Y; Miller M; Xu J; Wang Z; Zhang K; Jia B; Hou X; Lin L; Yang Q; Lee S; Li B; Kuan S; Liu H; Zhou J; Pinto-Duarte A; Lucero J; Osteen J; Nunn M; Smith KA; Tasic B; Yao Z; Zeng H; Wang Z; Shang J; Behrens MM; Ecker JR; Wang A; Preissl S; Ren B
    Nature; 2023 Dec; 624(7991):378-389. PubMed ID: 38092917
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Addiction-Associated Genetic Variants Implicate Brain Cell Type- and Region-Specific Cis-Regulatory Elements in Addiction Neurobiology.
    Srinivasan C; Phan BN; Lawler AJ; Ramamurthy E; Kleyman M; Brown AR; Kaplow IM; Wirthlin ME; Pfenning AR
    J Neurosci; 2021 Oct; 41(43):9008-9030. PubMed ID: 34462306
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An atlas of dynamic chromatin landscapes in mouse fetal development.
    Gorkin DU; Barozzi I; Zhao Y; Zhang Y; Huang H; Lee AY; Li B; Chiou J; Wildberg A; Ding B; Zhang B; Wang M; Strattan JS; Davidson JM; Qiu Y; Afzal V; Akiyama JA; Plajzer-Frick I; Novak CS; Kato M; Garvin TH; Pham QT; Harrington AN; Mannion BJ; Lee EA; Fukuda-Yuzawa Y; He Y; Preissl S; Chee S; Han JY; Williams BA; Trout D; Amrhein H; Yang H; Cherry JM; Wang W; Gaulton K; Ecker JR; Shen Y; Dickel DE; Visel A; Pennacchio LA; Ren B
    Nature; 2020 Jul; 583(7818):744-751. PubMed ID: 32728240
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The landscape of accessible chromatin in mammalian preimplantation embryos.
    Wu J; Huang B; Chen H; Yin Q; Liu Y; Xiang Y; Zhang B; Liu B; Wang Q; Xia W; Li W; Li Y; Ma J; Peng X; Zheng H; Ming J; Zhang W; Zhang J; Tian G; Xu F; Chang Z; Na J; Yang X; Xie W
    Nature; 2016 Jun; 534(7609):652-7. PubMed ID: 27309802
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A single-cell atlas of chromatin accessibility in the human genome.
    Zhang K; Hocker JD; Miller M; Hou X; Chiou J; Poirion OB; Qiu Y; Li YE; Gaulton KJ; Wang A; Preissl S; Ren B
    Cell; 2021 Nov; 184(24):5985-6001.e19. PubMed ID: 34774128
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH.
    Zhang M; Eichhorn SW; Zingg B; Yao Z; Cotter K; Zeng H; Dong H; Zhuang X
    Nature; 2021 Oct; 598(7879):137-143. PubMed ID: 34616063
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A map of the cis-regulatory sequences in the mouse genome.
    Shen Y; Yue F; McCleary DF; Ye Z; Edsall L; Kuan S; Wagner U; Dixon J; Lee L; Lobanenkov VV; Ren B
    Nature; 2012 Aug; 488(7409):116-20. PubMed ID: 22763441
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex.
    Luo C; Keown CL; Kurihara L; Zhou J; He Y; Li J; Castanon R; Lucero J; Nery JR; Sandoval JP; Bui B; Sejnowski TJ; Harkins TT; Mukamel EA; Behrens MM; Ecker JR
    Science; 2017 Aug; 357(6351):600-604. PubMed ID: 28798132
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Cell-type specialization is encoded by specific chromatin topologies.
    Winick-Ng W; Kukalev A; Harabula I; Zea-Redondo L; Szabó D; Meijer M; Serebreni L; Zhang Y; Bianco S; Chiariello AM; Irastorza-Azcarate I; Thieme CJ; Sparks TM; Carvalho S; Fiorillo L; Musella F; Irani E; Torlai Triglia E; Kolodziejczyk AA; Abentung A; Apostolova G; Paul EJ; Franke V; Kempfer R; Akalin A; Teichmann SA; Dechant G; Ungless MA; Nicodemi M; Welch L; Castelo-Branco G; Pombo A
    Nature; 2021 Nov; 599(7886):684-691. PubMed ID: 34789882
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Conserved and divergent gene regulatory programs of the mammalian neocortex.
    Zemke NR; Armand EJ; Wang W; Lee S; Zhou J; Li YE; Liu H; Tian W; Nery JR; Castanon RG; Bartlett A; Osteen JK; Li D; Zhuo X; Xu V; Chang L; Dong K; Indralingam HS; Rink JA; Xie Y; Miller M; Krienen FM; Zhang Q; Taskin N; Ting J; Feng G; McCarroll SA; Callaway EM; Wang T; Lein ES; Behrens MM; Ecker JR; Ren B
    Nature; 2023 Dec; 624(7991):390-402. PubMed ID: 38092918
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Impacts of genomic networks governed by human-specific regulatory sequences and genetic loci harboring fixed human-specific neuro-regulatory single nucleotide mutations on phenotypic traits of modern humans.
    Glinsky GV
    Chromosome Res; 2020 Dec; 28(3-4):331-354. PubMed ID: 32902713
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex.
    Yao Z; Liu H; Xie F; Fischer S; Adkins RS; Aldridge AI; Ament SA; Bartlett A; Behrens MM; Van den Berge K; Bertagnolli D; de Bézieux HR; Biancalani T; Booeshaghi AS; Bravo HC; Casper T; Colantuoni C; Crabtree J; Creasy H; Crichton K; Crow M; Dee N; Dougherty EL; Doyle WI; Dudoit S; Fang R; Felix V; Fong O; Giglio M; Goldy J; Hawrylycz M; Herb BR; Hertzano R; Hou X; Hu Q; Kancherla J; Kroll M; Lathia K; Li YE; Lucero JD; Luo C; Mahurkar A; McMillen D; Nadaf NM; Nery JR; Nguyen TN; Niu SY; Ntranos V; Orvis J; Osteen JK; Pham T; Pinto-Duarte A; Poirion O; Preissl S; Purdom E; Rimorin C; Risso D; Rivkin AC; Smith K; Street K; Sulc J; Svensson V; Tieu M; Torkelson A; Tung H; Vaishnav ED; Vanderburg CR; van Velthoven C; Wang X; White OR; Huang ZJ; Kharchenko PV; Pachter L; Ngai J; Regev A; Tasic B; Welch JD; Gillis J; Macosko EZ; Ren B; Ecker JR; Zeng H; Mukamel EA
    Nature; 2021 Oct; 598(7879):103-110. PubMed ID: 34616066
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genetic and epigenetic features of promoters with ubiquitous chromatin accessibility support ubiquitous transcription of cell-essential genes.
    Fan K; Moore JE; Zhang XO; Weng Z
    Nucleic Acids Res; 2021 Jun; 49(10):5705-5725. PubMed ID: 33978759
    [TBL] [Abstract][Full Text] [Related]  

  • 17. An atlas of chromatin accessibility in the adult human brain.
    Fullard JF; Hauberg ME; Bendl J; Egervari G; Cirnaru MD; Reach SM; Motl J; Ehrlich ME; Hurd YL; Roussos P
    Genome Res; 2018 Aug; 28(8):1243-1252. PubMed ID: 29945882
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The Human and Mouse Enteric Nervous System at Single-Cell Resolution.
    Drokhlyansky E; Smillie CS; Van Wittenberghe N; Ericsson M; Griffin GK; Eraslan G; Dionne D; Cuoco MS; Goder-Reiser MN; Sharova T; Kuksenko O; Aguirre AJ; Boland GM; Graham D; Rozenblatt-Rosen O; Xavier RJ; Regev A
    Cell; 2020 Sep; 182(6):1606-1622.e23. PubMed ID: 32888429
    [TBL] [Abstract][Full Text] [Related]  

  • 19. From trans to cis: transcriptional regulatory networks in neocortical development.
    Shibata M; Gulden FO; Sestan N
    Trends Genet; 2015 Feb; 31(2):77-87. PubMed ID: 25624274
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Using a comprehensive atlas and predictive models to reveal the complexity and evolution of brain-active regulatory elements.
    Pratt HE; Andrews G; Shedd N; Phalke N; Li T; Pampari A; Jensen M; Wen C; Consortium P; Gandal MJ; Geschwind DH; Gerstein M; Moore J; Kundaje A; Colubri A; Weng Z
    Sci Adv; 2024 May; 10(21):eadj4452. PubMed ID: 38781344
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 19.