These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

293 related articles for article (PubMed ID: 34620862)

  • 1. Efficient and precise single-cell reference atlas mapping with Symphony.
    Kang JB; Nathan A; Weinand K; Zhang F; Millard N; Rumker L; Moody DB; Korsunsky I; Raychaudhuri S
    Nat Commun; 2021 Oct; 12(1):5890. PubMed ID: 34620862
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Scarf enables a highly memory-efficient analysis of large-scale single-cell genomics data.
    Dhapola P; Rodhe J; Olofzon R; Bonald T; Erlandsson E; Soneji S; Karlsson G
    Nat Commun; 2022 Aug; 13(1):4616. PubMed ID: 35941103
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Single-cell reference mapping to construct and extend cell-type hierarchies.
    Michielsen L; Lotfollahi M; Strobl D; Sikkema L; Reinders MJT; Theis FJ; Mahfouz A
    NAR Genom Bioinform; 2023 Sep; 5(3):lqad070. PubMed ID: 37502708
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Sincast: a computational framework to predict cell identities in single-cell transcriptomes using bulk atlases as references.
    Deng Y; Choi J; Lê Cao KA
    Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35362513
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MCProj: metacell projection for interpretable and quantitative use of transcriptional atlases.
    Ben-Kiki O; Bercovich A; Lifshitz A; Raz O; Brook D; Tanay A
    Genome Biol; 2023 Oct; 24(1):220. PubMed ID: 37798781
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Mapping single-cell data to reference atlases by transfer learning.
    Lotfollahi M; Naghipourfar M; Luecken MD; Khajavi M; Büttner M; Wagenstetter M; Avsec Ž; Gayoso A; Yosef N; Interlandi M; Rybakov S; Misharin AV; Theis FJ
    Nat Biotechnol; 2022 Jan; 40(1):121-130. PubMed ID: 34462589
    [TBL] [Abstract][Full Text] [Related]  

  • 7. mosaicMPI: a framework for modular data integration across cohorts and -omics modalities.
    Verhey TB; Seo H; Gillmor A; Thoppey-Manoharan V; Schriemer D; Morrissy S
    Nucleic Acids Res; 2024 Jul; 52(12):e53. PubMed ID: 38813827
    [TBL] [Abstract][Full Text] [Related]  

  • 8. smsMap: mapping single molecule sequencing reads by locating the alignment starting positions.
    Wei ZG; Zhang SW; Liu F
    BMC Bioinformatics; 2020 Aug; 21(1):341. PubMed ID: 32753028
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The future of rapid and automated single-cell data analysis using reference mapping.
    Lotfollahi M; Yuhan Hao ; Theis FJ; Satija R
    Cell; 2024 May; 187(10):2343-2358. PubMed ID: 38729109
    [TBL] [Abstract][Full Text] [Related]  

  • 10. UINMF performs mosaic integration of single-cell multi-omic datasets using nonnegative matrix factorization.
    Kriebel AR; Welch JD
    Nat Commun; 2022 Feb; 13(1):780. PubMed ID: 35140223
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Cell-type annotation with accurate unseen cell-type identification using multiple references.
    Xiong YX; Wang MG; Chen L; Zhang XF
    PLoS Comput Biol; 2023 Jun; 19(6):e1011261. PubMed ID: 37379341
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Mosaic integration and knowledge transfer of single-cell multimodal data with MIDAS.
    He Z; Hu S; Chen Y; An S; Zhou J; Liu R; Shi J; Wang J; Dong G; Shi J; Zhao J; Ou-Yang L; Zhu Y; Bo X; Ying X
    Nat Biotechnol; 2024 Oct; 42(10):1594-1605. PubMed ID: 38263515
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Biologically informed deep learning to query gene programs in single-cell atlases.
    Lotfollahi M; Rybakov S; Hrovatin K; Hediyeh-Zadeh S; Talavera-López C; Misharin AV; Theis FJ
    Nat Cell Biol; 2023 Feb; 25(2):337-350. PubMed ID: 36732632
    [TBL] [Abstract][Full Text] [Related]  

  • 14. PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds.
    Chen Y; Souaiaia T; Chen T
    Bioinformatics; 2009 Oct; 25(19):2514-21. PubMed ID: 19675096
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Querying large read collections in main memory: a versatile data structure.
    Philippe N; Salson M; Lecroq T; Léonard M; Commes T; Rivals E
    BMC Bioinformatics; 2011 Jun; 12():242. PubMed ID: 21682852
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Fast, sensitive and accurate integration of single-cell data with Harmony.
    Korsunsky I; Millard N; Fan J; Slowikowski K; Zhang F; Wei K; Baglaenko Y; Brenner M; Loh PR; Raychaudhuri S
    Nat Methods; 2019 Dec; 16(12):1289-1296. PubMed ID: 31740819
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells.
    Wolf FA; Hamey FK; Plass M; Solana J; Dahlin JS; Göttgens B; Rajewsky N; Simon L; Theis FJ
    Genome Biol; 2019 Mar; 20(1):59. PubMed ID: 30890159
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Modeling and analyzing single-cell multimodal data with deep parametric inference.
    Hu H; Feng Z; Lin H; Zhao J; Zhang Y; Xu F; Chen L; Chen F; Ma Y; Su J; Zhao Q; Shuai J
    Brief Bioinform; 2023 Jan; 24(1):. PubMed ID: 36642414
    [TBL] [Abstract][Full Text] [Related]  

  • 19. AlignerBoost: A Generalized Software Toolkit for Boosting Next-Gen Sequencing Mapping Accuracy Using a Bayesian-Based Mapping Quality Framework.
    Zheng Q; Grice EA
    PLoS Comput Biol; 2016 Oct; 12(10):e1005096. PubMed ID: 27706155
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Fast and SNP-aware short read alignment with SALT.
    Quan W; Liu B; Wang Y
    BMC Bioinformatics; 2021 Aug; 22(Suppl 9):172. PubMed ID: 34433415
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.