138 related articles for article (PubMed ID: 34623430)
1. PATO: Pangenome Analysis Toolkit.
Fernández-de-Bobadilla MD; Talavera-Rodríguez A; Chacón L; Baquero F; Coque TM; Lanza VF
Bioinformatics; 2021 Dec; 37(23):4564-4566. PubMed ID: 34623430
[TBL] [Abstract][Full Text] [Related]
2. ODGI: understanding pangenome graphs.
Guarracino A; Heumos S; Nahnsen S; Prins P; Garrison E
Bioinformatics; 2022 Jun; 38(13):3319-3326. PubMed ID: 35552372
[TBL] [Abstract][Full Text] [Related]
3. PATO: genome-wide prediction of lncRNA-DNA triple helices.
Amatria-Barral I; González-Domínguez J; Touriño J
Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36924420
[TBL] [Abstract][Full Text] [Related]
4. simurg: simulate bacterial pangenomes in R.
Ferrés I; Fresia P; Iraola G
Bioinformatics; 2020 Feb; 36(4):1273-1274. PubMed ID: 31584605
[TBL] [Abstract][Full Text] [Related]
5. Gcluster: a simple-to-use tool for visualizing and comparing genome contexts for numerous genomes.
Li X; Chen F; Chen Y
Bioinformatics; 2020 Jun; 36(12):3871-3873. PubMed ID: 32221617
[TBL] [Abstract][Full Text] [Related]
6. syntenet: an R/Bioconductor package for the inference and analysis of synteny networks.
Almeida-Silva F; Zhao T; Ullrich KK; Schranz ME; Van de Peer Y
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36539202
[TBL] [Abstract][Full Text] [Related]
7. AcCNET (Accessory Genome Constellation Network): comparative genomics software for accessory genome analysis using bipartite networks.
Lanza VF; Baquero F; de la Cruz F; Coque TM
Bioinformatics; 2017 Jan; 33(2):283-285. PubMed ID: 27663497
[TBL] [Abstract][Full Text] [Related]
8. MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs).
Stewart RD; Auffret MD; Snelling TJ; Roehe R; Watson M
Bioinformatics; 2019 Jun; 35(12):2150-2152. PubMed ID: 30418481
[TBL] [Abstract][Full Text] [Related]
9. Roary: rapid large-scale prokaryote pan genome analysis.
Page AJ; Cummins CA; Hunt M; Wong VK; Reuter S; Holden MT; Fookes M; Falush D; Keane JA; Parkhill J
Bioinformatics; 2015 Nov; 31(22):3691-3. PubMed ID: 26198102
[TBL] [Abstract][Full Text] [Related]
10. PRAWNS: compact pan-genomic features for whole-genome population genomics.
Javkar K; Rand H; Strain E; Pop M
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36579850
[TBL] [Abstract][Full Text] [Related]
11. MitoFlex: an efficient, high-performance toolkit for animal mitogenome assembly, annotation and visualization.
Li JY; Li WX; Wang AT; Zhang Y
Bioinformatics; 2021 Sep; 37(18):3001-3003. PubMed ID: 33605414
[TBL] [Abstract][Full Text] [Related]
12. Hierarchical sets: analyzing pangenome structure through scalable set visualizations.
Pedersen TL
Bioinformatics; 2017 Jun; 33(11):1604-1612. PubMed ID: 28130242
[TBL] [Abstract][Full Text] [Related]
13. SPECTRE: a suite of phylogenetic tools for reticulate evolution.
Bastkowski S; Mapleson D; Spillner A; Wu T; Balvociute M; Moulton V
Bioinformatics; 2018 Mar; 34(6):1056-1057. PubMed ID: 29186450
[TBL] [Abstract][Full Text] [Related]
14. AGC: compact representation of assembled genomes with fast queries and updates.
Deorowicz S; Danek A; Li H
Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36864624
[TBL] [Abstract][Full Text] [Related]
15. Panacus: fast and exact pangenome growth and core size estimation.
Parmigiani L; Garrison E; Stoye J; Marschall T; Doerr D
bioRxiv; 2024 Jun; ():. PubMed ID: 38915671
[TBL] [Abstract][Full Text] [Related]
16. PhyloWGA: chromosome-aware phylogenetic interrogation of whole genome alignments.
Adams RH; Castoe TA; DeGiorgio M
Bioinformatics; 2021 Jul; 37(13):1923-1925. PubMed ID: 33051672
[TBL] [Abstract][Full Text] [Related]
17. AKT: ancestry and kinship toolkit.
Arthur R; Schulz-Trieglaff O; Cox AJ; O'Connell J
Bioinformatics; 2017 Jan; 33(1):142-144. PubMed ID: 27634946
[TBL] [Abstract][Full Text] [Related]
18. C3D: a tool to predict 3D genomic interactions between cis-regulatory elements.
Mehdi T; Bailey SD; Guilhamon P; Lupien M
Bioinformatics; 2019 Mar; 35(5):877-879. PubMed ID: 30816925
[TBL] [Abstract][Full Text] [Related]
19. PanViz: interactive visualization of the structure of functionally annotated pangenomes.
Pedersen TL; Nookaew I; Wayne Ussery D; Månsson M
Bioinformatics; 2017 Apr; 33(7):1081-1082. PubMed ID: 28057677
[TBL] [Abstract][Full Text] [Related]
20. VisFeature: a stand-alone program for visualizing and analyzing statistical features of biological sequences.
Wang J; Du PF; Xue XY; Li GP; Zhou YK; Zhao W; Lin H; Chen W
Bioinformatics; 2020 Feb; 36(4):1277-1278. PubMed ID: 31504195
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
