175 related articles for article (PubMed ID: 34626369)
21. Identification and characterization of a glycosaminoglycan binding site on interleukin-10 via molecular simulation methods.
Gehrcke JP; Pisabarro MT
J Mol Graph Model; 2015 Nov; 62():97-104. PubMed ID: 26409190
[TBL] [Abstract][Full Text] [Related]
22. Explicit solvent repulsive scaling replica exchange molecular dynamics (RS-REMD) in molecular modeling of protein-glycosaminoglycan complexes.
Marcisz M; Gaardløs M; Bojarski KK; Siebenmorgen T; Zacharias M; Samsonov SA
J Comput Chem; 2022 Sep; 43(24):1633-1640. PubMed ID: 35796487
[TBL] [Abstract][Full Text] [Related]
23. Molecular dynamics and quantum mechanics of RNA: conformational and chemical change we can believe in.
Ditzler MA; Otyepka M; Sponer J; Walter NG
Acc Chem Res; 2010 Jan; 43(1):40-7. PubMed ID: 19754142
[TBL] [Abstract][Full Text] [Related]
24. Docking glycosaminoglycans to proteins: analysis of solvent inclusion.
Samsonov SA; Teyra J; Pisabarro MT
J Comput Aided Mol Des; 2011 May; 25(5):477-89. PubMed ID: 21597992
[TBL] [Abstract][Full Text] [Related]
25. Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).
Foffi G; Pastore A; Piazza F; Temussi PA
Phys Biol; 2013 Aug; 10(4):040301. PubMed ID: 23912807
[TBL] [Abstract][Full Text] [Related]
26. Role of Oligosaccharide Chain Polarity in Protein-Glycosaminoglycan Interactions.
Bojarski KK; Samsonov SA
J Chem Inf Model; 2021 Jan; 61(1):455-466. PubMed ID: 33375794
[TBL] [Abstract][Full Text] [Related]
27. Coarse-grained model of glycosaminoglycans.
Samsonov SA; Bichmann L; Pisabarro MT
J Chem Inf Model; 2015 Jan; 55(1):114-24. PubMed ID: 25490039
[TBL] [Abstract][Full Text] [Related]
28. Enzymatic degradation of glycosaminoglycans.
Ernst S; Langer R; Cooney CL; Sasisekharan R
Crit Rev Biochem Mol Biol; 1995; 30(5):387-444. PubMed ID: 8575190
[TBL] [Abstract][Full Text] [Related]
29. Modeling Protein-Glycosaminoglycan Complexes: Does the Size Matter?
Marcisz M; Zacharias M; Samsonov SA
J Chem Inf Model; 2021 Sep; 61(9):4475-4485. PubMed ID: 34494837
[TBL] [Abstract][Full Text] [Related]
30. Chemoenzymatic Synthesis of Glycosaminoglycans.
Zhang X; Lin L; Huang H; Linhardt RJ
Acc Chem Res; 2020 Feb; 53(2):335-346. PubMed ID: 31714740
[TBL] [Abstract][Full Text] [Related]
31. Effects of force fields on the conformational and dynamic properties of amyloid β(1-40) dimer explored by replica exchange molecular dynamics simulations.
Watts CR; Gregory A; Frisbie C; Lovas S
Proteins; 2018 Mar; 86(3):279-300. PubMed ID: 29235155
[TBL] [Abstract][Full Text] [Related]
32. The Effects of Different Glycosaminoglycans on the Structure and Aggregation of the Amyloid-β (16-22) Peptide.
Samantray S; Strodel B
J Phys Chem B; 2021 Jun; 125(21):5511-5525. PubMed ID: 34027669
[TBL] [Abstract][Full Text] [Related]
33. Efficient Construction of Atomic-Resolution Models of Non-Sulfated Chondroitin Glycosaminoglycan Using Molecular Dynamics Data.
Whitmore EK; Vesenka G; Sihler H; Guvench O
Biomolecules; 2020 Apr; 10(4):. PubMed ID: 32252422
[TBL] [Abstract][Full Text] [Related]
34. The structure of glycosaminoglycans and their interactions with proteins.
Gandhi NS; Mancera RL
Chem Biol Drug Des; 2008 Dec; 72(6):455-82. PubMed ID: 19090915
[TBL] [Abstract][Full Text] [Related]
35. Modeling large protein-glycosaminoglycan complexes using a fragment-based approach.
Samsonov SA; Zacharias M; Chauvot de Beauchene I
J Comput Chem; 2019 May; 40(14):1429-1439. PubMed ID: 30768805
[TBL] [Abstract][Full Text] [Related]
36. Molecular interactions of the anticancer agent ellipticine with glycosaminoglycans by in silico analysis.
Zsila F; Samsonov SA
Carbohydr Res; 2018 Jun; 462():28-33. PubMed ID: 29655053
[TBL] [Abstract][Full Text] [Related]
37. Solution NMR characterization of chemokine CXCL8/IL-8 monomer and dimer binding to glycosaminoglycans: structural plasticity mediates differential binding interactions.
Joseph PR; Mosier PD; Desai UR; Rajarathnam K
Biochem J; 2015 Nov; 472(1):121-33. PubMed ID: 26371375
[TBL] [Abstract][Full Text] [Related]
38. So you think computational approaches to understanding glycosaminoglycan-protein interactions are too dry and too rigid? Think again!
Sankaranarayanan NV; Nagarajan B; Desai UR
Curr Opin Struct Biol; 2018 Jun; 50():91-100. PubMed ID: 29328962
[TBL] [Abstract][Full Text] [Related]
39. Evaluation of replica exchange with repulsive scaling approach for docking glycosaminoglycans.
Maszota-Zieleniak M; Marcisz M; Kogut MM; Siebenmorgen T; Zacharias M; Samsonov SA
J Comput Chem; 2021 Jun; 42(15):1040-1053. PubMed ID: 33768554
[TBL] [Abstract][Full Text] [Related]
40. Residue 75 of interleukin-8 is crucial for its interactions with glycosaminoglycans.
Nordsieck K; Pichert A; Samsonov SA; Thomas L; Berger C; Pisabarro MT; Huster D; Beck-Sickinger AG
Chembiochem; 2012 Nov; 13(17):2558-66. PubMed ID: 23070988
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]