163 related articles for article (PubMed ID: 34647017)
21. Sharing and organizing research products as R packages.
Vuorre M; Crump MJC
Behav Res Methods; 2021 Apr; 53(2):792-802. PubMed ID: 32875401
[TBL] [Abstract][Full Text] [Related]
22. The impact of next-generation sequencing on genomics.
Zhang J; Chiodini R; Badr A; Zhang G
J Genet Genomics; 2011 Mar; 38(3):95-109. PubMed ID: 21477781
[TBL] [Abstract][Full Text] [Related]
23. FastaValidator: an open-source Java library to parse and validate FASTA formatted sequences.
Waldmann J; Gerken J; Hankeln W; Schweer T; Glöckner FO
BMC Res Notes; 2014 Jun; 7():365. PubMed ID: 24929426
[TBL] [Abstract][Full Text] [Related]
24. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines.
Meunier D; Pascarella A; Altukhov D; Jas M; Combrisson E; Lajnef T; Bertrand-Dubois D; Hadid V; Alamian G; Alves J; Barlaam F; Saive AL; Dehgan A; Jerbi K
Neuroimage; 2020 Oct; 219():117020. PubMed ID: 32522662
[TBL] [Abstract][Full Text] [Related]
25. Successes and Struggles with Computational Reproducibility: Lessons from the Fragile Families Challenge.
Liu DM; Salganik MJ
Socius; 2019; 5():. PubMed ID: 37309413
[TBL] [Abstract][Full Text] [Related]
26. Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).
Foffi G; Pastore A; Piazza F; Temussi PA
Phys Biol; 2013 Aug; 10(4):040301. PubMed ID: 23912807
[TBL] [Abstract][Full Text] [Related]
27. Toward collaborative open data science in metabolomics using Jupyter Notebooks and cloud computing.
Mendez KM; Pritchard L; Reinke SN; Broadhurst DI
Metabolomics; 2019 Sep; 15(10):125. PubMed ID: 31522294
[TBL] [Abstract][Full Text] [Related]
28. PEGR: a flexible management platform for reproducible epigenomic and genomic research.
Shao D; Kellogg GD; Nematbakhsh A; Kuntala PK; Mahony S; Pugh BF; Lai WKM
Genome Biol; 2022 Apr; 23(1):99. PubMed ID: 35440038
[TBL] [Abstract][Full Text] [Related]
29. Applications of the pipeline environment for visual informatics and genomics computations.
Dinov ID; Torri F; Macciardi F; Petrosyan P; Liu Z; Zamanyan A; Eggert P; Pierce J; Genco A; Knowles JA; Clark AP; Van Horn JD; Ames J; Kesselman C; Toga AW
BMC Bioinformatics; 2011 Jul; 12():304. PubMed ID: 21791102
[TBL] [Abstract][Full Text] [Related]
30. BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud.
Torre D; Lachmann A; Ma'ayan A
Cell Syst; 2018 Nov; 7(5):556-561.e3. PubMed ID: 30447998
[TBL] [Abstract][Full Text] [Related]
31. ReproPhylo: An Environment for Reproducible Phylogenomics.
Szitenberg A; John M; Blaxter ML; Lunt DH
PLoS Comput Biol; 2015 Sep; 11(9):e1004447. PubMed ID: 26335558
[TBL] [Abstract][Full Text] [Related]
32. STINGRAY: system for integrated genomic resources and analysis.
Wagner G; Jardim R; Tschoeke DA; Loureiro DR; Ocaña KA; Ribeiro AC; Emmel VE; Probst CM; Pitaluga AN; Grisard EC; Cavalcanti MC; Campos ML; Mattoso M; Dávila AM
BMC Res Notes; 2014 Mar; 7():132. PubMed ID: 24606808
[TBL] [Abstract][Full Text] [Related]
33. Proceedings of the Second Workshop on Theory meets Industry (Erwin-Schrödinger-Institute (ESI), Vienna, Austria, 12-14 June 2007).
Hafner J
J Phys Condens Matter; 2008 Feb; 20(6):060301. PubMed ID: 21693862
[TBL] [Abstract][Full Text] [Related]
34. COSAP: Comparative Sequencing Analysis Platform.
Ergun MA; Cinal O; Bakışlı B; Emül AA; Baysan M
BMC Bioinformatics; 2024 Mar; 25(1):130. PubMed ID: 38532317
[TBL] [Abstract][Full Text] [Related]
35. Collective knowledge: organizing research projects as a database of reusable components and portable workflows with common interfaces.
Fursin G
Philos Trans A Math Phys Eng Sci; 2021 May; 379(2197):20200211. PubMed ID: 33775147
[TBL] [Abstract][Full Text] [Related]
36. Understanding and improving the quality and reproducibility of Jupyter notebooks.
Pimentel JF; Murta L; Braganholo V; Freire J
Empir Softw Eng; 2021; 26(4):65. PubMed ID: 33994841
[TBL] [Abstract][Full Text] [Related]
37. Improving the usability of open health service delivery simulation models using Python and web apps.
Monks T; Harper A
NIHR Open Res; 2023; 3():48. PubMed ID: 37881450
[TBL] [Abstract][Full Text] [Related]
38. Enabling Agile Clinical and Translational Data Warehousing: Platform Development and Evaluation.
Spengler H; Lang C; Mahapatra T; Gatz I; Kuhn KA; Prasser F
JMIR Med Inform; 2020 Jul; 8(7):e15918. PubMed ID: 32706673
[TBL] [Abstract][Full Text] [Related]
39. Bioinformatics tools developed to support BioCompute Objects.
Patel JA; Dean DA; King CH; Xiao N; Koc S; Minina E; Golikov A; Brooks P; Kahsay R; Navelkar R; Ray M; Roberson D; Armstrong C; Mazumder R; Keeney J
Database (Oxford); 2021 Mar; 2021():. PubMed ID: 33784373
[TBL] [Abstract][Full Text] [Related]
40. The impact of Docker containers on the performance of genomic pipelines.
Di Tommaso P; Palumbo E; Chatzou M; Prieto P; Heuer ML; Notredame C
PeerJ; 2015; 3():e1273. PubMed ID: 26421241
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]