271 related articles for article (PubMed ID: 34648558)
41. Prokaryotic systematics in the genomics era.
Zhi XY; Zhao W; Li WJ; Zhao GP
Antonie Van Leeuwenhoek; 2012 Jan; 101(1):21-34. PubMed ID: 22116211
[TBL] [Abstract][Full Text] [Related]
42. Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer.
Bromberg R; Grishin NV; Otwinowski Z
PLoS Comput Biol; 2016 Jun; 12(6):e1004985. PubMed ID: 27336403
[TBL] [Abstract][Full Text] [Related]
43. Toward automatic reconstruction of a highly resolved tree of life.
Ciccarelli FD; Doerks T; von Mering C; Creevey CJ; Snel B; Bork P
Science; 2006 Mar; 311(5765):1283-7. PubMed ID: 16513982
[TBL] [Abstract][Full Text] [Related]
44. Phyletic Distribution and Lineage-Specific Domain Architectures of Archaeal Two-Component Signal Transduction Systems.
Galperin MY; Makarova KS; Wolf YI; Koonin EV
J Bacteriol; 2018 Apr; 200(7):. PubMed ID: 29263101
[TBL] [Abstract][Full Text] [Related]
45. Past and future species definitions for Bacteria and Archaea.
Rosselló-Móra R; Amann R
Syst Appl Microbiol; 2015 Jun; 38(4):209-16. PubMed ID: 25747618
[TBL] [Abstract][Full Text] [Related]
46. A completeness-independent method for pre-selection of closely related genomes for species delineation in prokaryotes.
Zhou Y; Zheng J; Wu Y; Zhang W; Jin J
BMC Genomics; 2020 Feb; 21(1):183. PubMed ID: 32102653
[TBL] [Abstract][Full Text] [Related]
47. Bacterial classification using genomic fingerprints obtained by virtual hybridization.
Jaimes-Díaz H; García-Chéquer AJ; Méndez-Tenorio A; Santiago-Hernández JC; Maldonado-Rodríguez R; Beattie KL
J Microbiol Methods; 2011 Dec; 87(3):286-94. PubMed ID: 21906634
[TBL] [Abstract][Full Text] [Related]
48. Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer.
Wolf YI; Makarova KS; Yutin N; Koonin EV
Biol Direct; 2012 Dec; 7():46. PubMed ID: 23241446
[TBL] [Abstract][Full Text] [Related]
49. Telling the whole story in a 10,000-genome world.
Beiko RG
Biol Direct; 2011 Jun; 6():34. PubMed ID: 21714939
[TBL] [Abstract][Full Text] [Related]
50. An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences.
Brochier C; Forterre P; Gribaldo S
BMC Evol Biol; 2005 Jun; 5():36. PubMed ID: 15932645
[TBL] [Abstract][Full Text] [Related]
51. The use of weighted graphs for large-scale genome analysis.
Zhou F; Toivonen H; King RD
PLoS One; 2014; 9(3):e89618. PubMed ID: 24619061
[TBL] [Abstract][Full Text] [Related]
52. ISEScan: automated identification of insertion sequence elements in prokaryotic genomes.
Xie Z; Tang H
Bioinformatics; 2017 Nov; 33(21):3340-3347. PubMed ID: 29077810
[TBL] [Abstract][Full Text] [Related]
53. A proposed genus boundary for the prokaryotes based on genomic insights.
Qin QL; Xie BB; Zhang XY; Chen XL; Zhou BC; Zhou J; Oren A; Zhang YZ
J Bacteriol; 2014 Jun; 196(12):2210-5. PubMed ID: 24706738
[TBL] [Abstract][Full Text] [Related]
54. MBGD: microbial genome database for comparative analysis.
Uchiyama I
Nucleic Acids Res; 2003 Jan; 31(1):58-62. PubMed ID: 12519947
[TBL] [Abstract][Full Text] [Related]
55. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes.
Kurtz S; Narechania A; Stein JC; Ware D
BMC Genomics; 2008 Oct; 9():517. PubMed ID: 18976482
[TBL] [Abstract][Full Text] [Related]
56. [A system for comparative analysis of microbial genomes].
Uchiyama I
Nihon Rinsho; 2003 Mar; 61 Suppl 3():441-8. PubMed ID: 12718007
[No Abstract] [Full Text] [Related]
57. uBin: A manual refining tool for genomes from metagenomes.
Bornemann TLV; Esser SP; Stach TL; Burg T; Probst AJ
Environ Microbiol; 2023 Jun; 25(6):1077-1083. PubMed ID: 36764661
[TBL] [Abstract][Full Text] [Related]
58. Retroids in archaea: phylogeny and lateral origins.
Rest JS; Mindell DP
Mol Biol Evol; 2003 Jul; 20(7):1134-42. PubMed ID: 12777534
[TBL] [Abstract][Full Text] [Related]
59. Sequencing of Genomes from Environmental Single Cells.
Bowers RM; Lee J; Woyke T
Methods Mol Biol; 2018; 1712():97-111. PubMed ID: 29224071
[TBL] [Abstract][Full Text] [Related]
60. Microbial genescapes: phyletic and functional patterns of ORF distribution among prokaryotes.
Gaasterland T; Ragan MA
Microb Comp Genomics; 1998; 3(4):199-217. PubMed ID: 10027190
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]