These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

174 related articles for article (PubMed ID: 34650271)

  • 1. High-confidence structural annotation of metabolites absent from spectral libraries.
    Hoffmann MA; Nothias LF; Ludwig M; Fleischauer M; Gentry EC; Witting M; Dorrestein PC; Dührkop K; Böcker S
    Nat Biotechnol; 2022 Mar; 40(3):411-421. PubMed ID: 34650271
    [TBL] [Abstract][Full Text] [Related]  

  • 2. How large is the metabolome? A critical analysis of data exchange practices in chemistry.
    Kind T; Scholz M; Fiehn O
    PLoS One; 2009; 4(5):e5440. PubMed ID: 19415114
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Systems-Level Annotation of a Metabolomics Data Set Reduces 25 000 Features to Fewer than 1000 Unique Metabolites.
    Mahieu NG; Patti GJ
    Anal Chem; 2017 Oct; 89(19):10397-10406. PubMed ID: 28914531
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Hybrid Search: A Method for Identifying Metabolites Absent from Tandem Mass Spectrometry Libraries.
    Cooper BT; Yan X; Simón-Manso Y; Tchekhovskoi DV; Mirokhin YA; Stein SE
    Anal Chem; 2019 Nov; 91(21):13924-13932. PubMed ID: 31600070
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Applying in-silico retention index and mass spectra matching for identification of unknown metabolites in accurate mass GC-TOF mass spectrometry.
    Kumari S; Stevens D; Kind T; Denkert C; Fiehn O
    Anal Chem; 2011 Aug; 83(15):5895-902. PubMed ID: 21678983
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Deep Learning Based Metabolite Annotation.
    Chau HYK; Ao H; Zhang X; Gao S; Varghese RS; Ressom HW
    Annu Int Conf IEEE Eng Med Biol Soc; 2023 Jul; 2023():1-4. PubMed ID: 38082953
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Topic modeling for untargeted substructure exploration in metabolomics.
    van der Hooft JJ; Wandy J; Barrett MP; Burgess KE; Rogers S
    Proc Natl Acad Sci U S A; 2016 Nov; 113(48):13738-13743. PubMed ID: 27856765
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software.
    Tsugawa H; Kind T; Nakabayashi R; Yukihira D; Tanaka W; Cajka T; Saito K; Fiehn O; Arita M
    Anal Chem; 2016 Aug; 88(16):7946-58. PubMed ID: 27419259
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Ion entropy and accurate entropy-based FDR estimation in metabolomics.
    An S; Lu M; Wang R; Wang J; Jiang H; Xie C; Tong J; Yu C
    Brief Bioinform; 2024 Jan; 25(2):. PubMed ID: 38426325
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Significance estimation for large scale metabolomics annotations by spectral matching.
    Scheubert K; Hufsky F; Petras D; Wang M; Nothias LF; Dührkop K; Bandeira N; Dorrestein PC; Böcker S
    Nat Commun; 2017 Nov; 8(1):1494. PubMed ID: 29133785
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Mind the Gap: Mapping Mass Spectral Databases in Genome-Scale Metabolic Networks Reveals Poorly Covered Areas.
    Frainay C; Schymanski EL; Neumann S; Merlet B; Salek RM; Jourdan F; Yanes O
    Metabolites; 2018 Sep; 8(3):. PubMed ID: 30223552
    [TBL] [Abstract][Full Text] [Related]  

  • 12. microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data.
    Zuffa S; Schmid R; Bauermeister A; P Gomes PW; Caraballo-Rodriguez AM; El Abiead Y; Aron AT; Gentry EC; Zemlin J; Meehan MJ; Avalon NE; Cichewicz RH; Buzun E; Terrazas MC; Hsu CY; Oles R; Ayala AV; Zhao J; Chu H; Kuijpers MCM; Jackrel SL; Tugizimana F; Nephali LP; Dubery IA; Madala NE; Moreira EA; Costa-Lotufo LV; Lopes NP; Rezende-Teixeira P; Jimenez PC; Rimal B; Patterson AD; Traxler MF; Pessotti RC; Alvarado-Villalobos D; Tamayo-Castillo G; Chaverri P; Escudero-Leyva E; Quiros-Guerrero LM; Bory AJ; Joubert J; Rutz A; Wolfender JL; Allard PM; Sichert A; Pontrelli S; Pullman BS; Bandeira N; Gerwick WH; Gindro K; Massana-Codina J; Wagner BC; Forchhammer K; Petras D; Aiosa N; Garg N; Liebeke M; Bourceau P; Kang KB; Gadhavi H; de Carvalho LPS; Silva Dos Santos M; Pérez-Lorente AI; Molina-Santiago C; Romero D; Franke R; Brönstrup M; Vera Ponce de León A; Pope PB; La Rosa SL; La Barbera G; Roager HM; Laursen MF; Hammerle F; Siewert B; Peintner U; Licona-Cassani C; Rodriguez-Orduña L; Rampler E; Hildebrand F; Koellensperger G; Schoeny H; Hohenwallner K; Panzenboeck L; Gregor R; O'Neill EC; Roxborough ET; Odoi J; Bale NJ; Ding S; Sinninghe Damsté JS; Guan XL; Cui JJ; Ju KS; Silva DB; Silva FMR; da Silva GF; Koolen HHF; Grundmann C; Clement JA; Mohimani H; Broders K; McPhail KL; Ober-Singleton SE; Rath CM; McDonald D; Knight R; Wang M; Dorrestein PC
    Nat Microbiol; 2024 Feb; 9(2):336-345. PubMed ID: 38316926
    [TBL] [Abstract][Full Text] [Related]  

  • 13. IDSL_MINT: a deep learning framework to predict molecular fingerprints from mass spectra.
    Baygi SF; Barupal DK
    J Cheminform; 2024 Jan; 16(1):8. PubMed ID: 38238779
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Pathway-Activity Likelihood Analysis and Metabolite Annotation for Untargeted Metabolomics Using Probabilistic Modeling.
    Hosseini R; Hassanpour N; Liu LP; Hassoun S
    Metabolites; 2020 May; 10(5):. PubMed ID: 32375258
    [No Abstract]   [Full Text] [Related]  

  • 15. FragHub: A Mass Spectral Library Data Integration Workflow.
    Dablanc A; Hennechart S; Perez A; Cabanac G; Guitton Y; Paulhe N; Lyan B; Jamin EL; Giacomoni F; Marti G
    Anal Chem; 2024 Jul; ():. PubMed ID: 39028894
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Tailored Mass Spectral Data Exploration Using the SpecXplore Interactive Dashboard.
    Mildau K; Ehlers H; Oesterle I; Pristner M; Warth B; Doppler M; Bueschl C; Zanghellini J; van der Hooft JJJ
    Anal Chem; 2024 Apr; 96(15):5798-5806. PubMed ID: 38564584
    [TBL] [Abstract][Full Text] [Related]  

  • 17. 3D-MPEA: A Graph Attention Model-Guided Computational Approach for Annotating Unknown Metabolites in Interactomics via Mass Spectrometry-Focused Multilayer Molecular Networking.
    Fan Z; Jia W
    Anal Chem; 2024 May; 96(19):7532-7541. PubMed ID: 38700430
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Reverse metabolomics as a novel strategy to annotate the human metabolome.
    Yan T; Nie L; Hao H
    Chin J Nat Med; 2024 Apr; 22(4):289-290. PubMed ID: 38658091
    [No Abstract]   [Full Text] [Related]  

  • 19. Metabolite discovery through global annotation of untargeted metabolomics data.
    Chen L; Lu W; Wang L; Xing X; Chen Z; Teng X; Zeng X; Muscarella AD; Shen Y; Cowan A; McReynolds MR; Kennedy BJ; Lato AM; Campagna SR; Singh M; Rabinowitz JD
    Nat Methods; 2021 Nov; 18(11):1377-1385. PubMed ID: 34711973
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Studying Plant Specialized Metabolites Using Computational Metabolomics Strategies.
    Mutabdžija L; Myoli A; de Jonge NF; Damiani T; Schmid R; van der Hooft JJJ; Tugizimana F; Pluskal T
    Methods Mol Biol; 2024; 2788():97-136. PubMed ID: 38656511
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.