53 related articles for article (PubMed ID: 34666191)
1. Integrative modeling reveals key chromatin and sequence signatures predicting super-enhancers.
Khan A; Zhang X
Sci Rep; 2019 Feb; 9(1):2877. PubMed ID: 30814546
[TBL] [Abstract][Full Text] [Related]
2. Super enhancer lncRNAs: a novel hallmark in cancer.
Song P; Han R; Yang F
Cell Commun Signal; 2024 Apr; 22(1):207. PubMed ID: 38566153
[TBL] [Abstract][Full Text] [Related]
3. Super-enhancers in the control of cell identity and disease.
Hnisz D; Abraham BJ; Lee TI; Lau A; Saint-André V; Sigova AA; Hoke HA; Young RA
Cell; 2013 Nov; 155(4):934-47. PubMed ID: 24119843
[TBL] [Abstract][Full Text] [Related]
4. Purification of immune-active macrophage super enhancers by chemical cross-linked chromatin immune precipitation.
Das S; Mukherjee S; Ali N
STAR Protoc; 2023 Mar; 4(1):102004. PubMed ID: 36638018
[TBL] [Abstract][Full Text] [Related]
5. Super-Enhancers and Their Parts: From Prediction Efforts to Pathognomonic Status.
Vasileva AV; Gladkova MG; Ashniev GA; Osintseva ED; Orlov AV; Kravchuk EV; Boldyreva AV; Burenin AG; Nikitin PI; Orlova NN
Int J Mol Sci; 2024 Mar; 25(6):. PubMed ID: 38542080
[TBL] [Abstract][Full Text] [Related]
6. EnhancerTracker: Comparing cell-type-specific enhancer activity of DNA sequence triplets via an ensemble of deep convolutional neural networks.
Garza AB; Garcia R; Solis LM; Halfon MS; Girgis HZ
bioRxiv; 2023 Dec; ():. PubMed ID: 38187673
[TBL] [Abstract][Full Text] [Related]
7. SilenceREIN: seeking silencers on anchors of chromatin loops by deep graph neural networks.
Pan JH; Du PF
Brief Bioinform; 2023 Nov; 25(1):. PubMed ID: 38168841
[TBL] [Abstract][Full Text] [Related]
8. A body map of super-enhancers and their function in pig.
Yang Y; Li X; Meng Z; Liu Y; Qian K; Chu M; Pan Z
Front Vet Sci; 2023; 10():1239965. PubMed ID: 37869495
[TBL] [Abstract][Full Text] [Related]
9. An intrinsically interpretable neural network architecture for sequence-to-function learning.
Balcı AT; Ebeid MM; Benos PV; Kostka D; Chikina M
Bioinformatics; 2023 Jun; 39(39 Suppl 1):i413-i422. PubMed ID: 37387140
[TBL] [Abstract][Full Text] [Related]
10. Super-enhancers: drivers of cells' identities and cells' debacles.
Lavaud M; Tesfaye R; Lassous L; Brounais B; Baud'huin M; Verrecchia F; Lamoureux F; Georges S; Ory B
Epigenomics; 2024 Apr; 16(9):681-700. PubMed ID: 38587919
[TBL] [Abstract][Full Text] [Related]
11. Super-enhancer interactomes from single cells link clustering and transcription.
Le DJ; Hafner A; Gaddam S; Wang KC; Boettiger AN
bioRxiv; 2024 May; ():. PubMed ID: 38766104
[TBL] [Abstract][Full Text] [Related]
12. Pathogenic role of super-enhancers as potential therapeutic targets in lung cancer.
Yao Z; Song P; Jiao W
Front Pharmacol; 2024; 15():1383580. PubMed ID: 38681203
[TBL] [Abstract][Full Text] [Related]
13. DeepCORE: An interpretable multi-view deep neural network model to detect co-operative regulatory elements.
Chandrashekar PB; Chen H; Lee M; Ahmadinejad N; Liu L
bioRxiv; 2023 Apr; ():. PubMed ID: 37131697
[TBL] [Abstract][Full Text] [Related]
14. The hidden world of transient enhancers.
Beekman R
Nat Rev Genet; 2024 Apr; ():. PubMed ID: 38684857
[No Abstract] [Full Text] [Related]
15. Experimental Validation and Prediction of Super-Enhancers: Advances and Challenges.
Kravchuk EV; Ashniev GA; Gladkova MG; Orlov AV; Vasileva AV; Boldyreva AV; Burenin AG; Skirda AM; Nikitin PI; Orlova NN
Cells; 2023 Apr; 12(8):. PubMed ID: 37190100
[TBL] [Abstract][Full Text] [Related]
16. Analysis of super-enhancer using machine learning and its application to medical biology.
Hamamoto R; Takasawa K; Shinkai N; Machino H; Kouno N; Asada K; Komatsu M; Kaneko S
Brief Bioinform; 2023 May; 24(3):. PubMed ID: 36960780
[TBL] [Abstract][Full Text] [Related]
17. DeepSE: Detecting super-enhancers among typical enhancers using only sequence feature embeddings.
Ji QY; Gong XJ; Li HM; Du PF
Genomics; 2021 Nov; 113(6):4052-4060. PubMed ID: 34666191
[TBL] [Abstract][Full Text] [Related]
18. SENet: A deep learning framework for discriminating super- and typical enhancers by sequence information.
Luo H; Li Y; Liu H; Ding P; Yu Y; Luo L
Comput Biol Chem; 2023 Aug; 105():107905. PubMed ID: 37348298
[TBL] [Abstract][Full Text] [Related]
19. DeepCAPE: A Deep Convolutional Neural Network for the Accurate Prediction of Enhancers.
Chen S; Gan M; Lv H; Jiang R
Genomics Proteomics Bioinformatics; 2021 Aug; 19(4):565-577. PubMed ID: 33581335
[TBL] [Abstract][Full Text] [Related]
20.
; ; . PubMed ID:
[No Abstract] [Full Text] [Related]
[Next] [New Search]