202 related articles for article (PubMed ID: 34718719)
1. MetazExp: a database for gene expression and alternative splicing profiles and their analyses based on 53 615 public RNA-seq samples in 72 metazoan species.
Liu J; Yin F; Lang K; Jie W; Tan S; Duan R; Huang S; Huang W
Nucleic Acids Res; 2022 Jan; 50(D1):D1046-D1054. PubMed ID: 34718719
[TBL] [Abstract][Full Text] [Related]
2. PlantExp: a platform for exploration of gene expression and alternative splicing based on public plant RNA-seq samples.
Liu J; Zhang Y; Zheng Y; Zhu Y; Shi Y; Guan Z; Lang K; Shen D; Huang W; Dou D
Nucleic Acids Res; 2023 Jan; 51(D1):D1483-D1491. PubMed ID: 36271793
[TBL] [Abstract][Full Text] [Related]
3. A web-based database server using 43,710 public RNA-seq samples for the analysis of gene expression and alternative splicing in livestock animals.
Liu J; Lang K; Tan S; Jie W; Zhu Y; Huang S; Huang W
BMC Genomics; 2022 Oct; 23(1):706. PubMed ID: 36253723
[TBL] [Abstract][Full Text] [Related]
4. FungiExp: a user-friendly database and analysis platform for exploring fungal gene expression and alternative splicing.
Liu J; Zhang Y; Shi Y; Zheng Y; Zhu Y; Guan Z; Shen D; Dou D
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36655761
[TBL] [Abstract][Full Text] [Related]
5. OneStopRNAseq: A Web Application for Comprehensive and Efficient Analyses of RNA-Seq Data.
Li R; Hu K; Liu H; Green MR; Zhu LJ
Genes (Basel); 2020 Oct; 11(10):. PubMed ID: 33023248
[TBL] [Abstract][Full Text] [Related]
6. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
[TBL] [Abstract][Full Text] [Related]
7. FishExp: A comprehensive database and analysis platform for gene expression and alternative splicing of fish species.
Tan S; Wang W; Jie W; Liu J
Comput Struct Biotechnol J; 2022; 20():3676-3684. PubMed ID: 35891795
[TBL] [Abstract][Full Text] [Related]
8. Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki).
Sturgill D; Malone JH; Sun X; Smith HE; Rabinow L; Samson ML; Oliver B
BMC Bioinformatics; 2013 Nov; 14():320. PubMed ID: 24209455
[TBL] [Abstract][Full Text] [Related]
9. MeDAS: a Metazoan Developmental Alternative Splicing database.
Li Z; Zhang Y; Bush SJ; Tang C; Chen L; Zhang D; Urrutia AO; Lin JW; Chen L
Nucleic Acids Res; 2021 Jan; 49(D1):D144-D150. PubMed ID: 33084905
[TBL] [Abstract][Full Text] [Related]
10. TeaAS: a comprehensive database for alternative splicing in tea plants (Camellia sinensis).
Mi X; Yue Y; Tang M; An Y; Xie H; Qiao D; Ma Z; Liu S; Wei C
BMC Plant Biol; 2021 Jun; 21(1):280. PubMed ID: 34154536
[TBL] [Abstract][Full Text] [Related]
11. AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data.
Fahmi NA; Nassereddeen H; Chang J; Park M; Yeh H; Sun J; Fan D; Yong J; Zhang W
Int J Mol Sci; 2021 Apr; 22(9):. PubMed ID: 33922891
[TBL] [Abstract][Full Text] [Related]
12. 3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists.
Guo W; Tzioutziou NA; Stephen G; Milne I; Calixto CP; Waugh R; Brown JWS; Zhang R
RNA Biol; 2021 Nov; 18(11):1574-1587. PubMed ID: 33345702
[TBL] [Abstract][Full Text] [Related]
13. Identification of novel alternative splicing biomarkers for breast cancer with LC/MS/MS and RNA-Seq.
Zhang F; Deng CK; Wang M; Deng B; Barber R; Huang G
BMC Bioinformatics; 2020 Dec; 21(Suppl 9):541. PubMed ID: 33272210
[TBL] [Abstract][Full Text] [Related]
14. SplicingTypesAnno: annotating and quantifying alternative splicing events for RNA-Seq data.
Sun X; Zuo F; Ru Y; Guo J; Yan X; Sablok G
Comput Methods Programs Biomed; 2015 Apr; 119(1):53-62. PubMed ID: 25720307
[TBL] [Abstract][Full Text] [Related]
15. One pipeline to predict them all? On the prediction of alternative splicing from RNA-Seq data.
Olofsson D; Preußner M; Kowar A; Heyd F; Neumann A
Biochem Biophys Res Commun; 2023 Apr; 653():31-37. PubMed ID: 36854218
[TBL] [Abstract][Full Text] [Related]
16. Determining Alternative Protein Isoform Expression Using RNA Sequencing and Mass Spectrometry.
Han Y; Wright JM; Lau E; Lam MPY
STAR Protoc; 2020 Dec; 1(3):100138. PubMed ID: 33377032
[TBL] [Abstract][Full Text] [Related]
17. AgriSeqDB: an online RNA-Seq database for functional studies of agriculturally relevant plant species.
Robinson AJ; Tamiru M; Salby R; Bolitho C; Williams A; Huggard S; Fisch E; Unsworth K; Whelan J; Lewsey MG
BMC Plant Biol; 2018 Sep; 18(1):200. PubMed ID: 30231853
[TBL] [Abstract][Full Text] [Related]
18. An 'eFP-Seq Browser' for visualizing and exploring RNA sequencing data.
Sullivan A; Purohit PK; Freese NH; Pasha A; Esteban E; Waese J; Wu A; Chen M; Chin CY; Song R; Watharkar SR; Chan AP; Krishnakumar V; Vaughn MW; Town C; Loraine AE; Provart NJ
Plant J; 2019 Nov; 100(3):641-654. PubMed ID: 31350781
[TBL] [Abstract][Full Text] [Related]
19. Systematic analysis of survival-associated alternative splicing signatures in clear cell renal cell carcinoma.
Chen T; Zheng W; Chen J; Lin S; Zou Z; Li X; Tan Z
J Cell Biochem; 2020 Oct; 121(10):4074-4084. PubMed ID: 31886566
[TBL] [Abstract][Full Text] [Related]
20. Detecting Allele-Specific Alternative Splicing from Population-Scale RNA-Seq Data.
Demirdjian L; Xu Y; Bahrami-Samani E; Pan Y; Stein S; Xie Z; Park E; Wu YN; Xing Y
Am J Hum Genet; 2020 Sep; 107(3):461-472. PubMed ID: 32781045
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]