These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

137 related articles for article (PubMed ID: 34734986)

  • 1. PhyloCSF++: a fast and user-friendly implementation of PhyloCSF with annotation tools.
    Pockrandt C; Steinegger M; Salzberg SL
    Bioinformatics; 2022 Feb; 38(5):1440-1442. PubMed ID: 34734986
    [TBL] [Abstract][Full Text] [Related]  

  • 2. GFF Utilities: GffRead and GffCompare.
    Pertea G; Pertea M
    F1000Res; 2020; 9():. PubMed ID: 32489650
    [No Abstract]   [Full Text] [Related]  

  • 3. Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci.
    Mudge JM; Jungreis I; Hunt T; Gonzalez JM; Wright JC; Kay M; Davidson C; Fitzgerald S; Seal R; Tweedie S; He L; Waterhouse RM; Li Y; Bruford E; Choudhary JS; Frankish A; Kellis M
    Genome Res; 2019 Dec; 29(12):2073-2087. PubMed ID: 31537640
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GenMap: ultra-fast computation of genome mappability.
    Pockrandt C; Alzamel M; Iliopoulos CS; Reinert K
    Bioinformatics; 2020 Jun; 36(12):3687-3692. PubMed ID: 32246826
    [TBL] [Abstract][Full Text] [Related]  

  • 5. G-OnRamp: a Galaxy-based platform for collaborative annotation of eukaryotic genomes.
    Liu Y; Sargent L; Leung W; Elgin SCR; Goecks J
    Bioinformatics; 2019 Nov; 35(21):4422-4423. PubMed ID: 31070714
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CRAMER: a lightweight, highly customizable web-based genome browser supporting multiple visualization instances.
    Anastasiadi M; Bragin E; Biojoux P; Ahamed A; Burgin J; de Castro Cogle K; Llaneza-Lago S; Muvunyi R; Scislak M; Aktan I; Molitor C; Kurowski T; Mohareb F
    Bioinformatics; 2020 Jun; 36(11):3556-3557. PubMed ID: 32108858
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions.
    Lin MF; Jungreis I; Kellis M
    Bioinformatics; 2011 Jul; 27(13):i275-82. PubMed ID: 21685081
    [TBL] [Abstract][Full Text] [Related]  

  • 8. gofasta: command-line utilities for genomic epidemiology research.
    Jackson B
    Bioinformatics; 2022 Aug; 38(16):4033-4035. PubMed ID: 35789376
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SeqEditor: an application for primer design and sequence analysis with or without GTF/GFF files.
    Hafez A; Futami R; Arastehfar A; Daneshnia F; Miguel A; Roig FJ; Soriano B; Perez-Sánchez J; Boekhout T; Gabaldón T; Llorens C
    Bioinformatics; 2021 Jul; 37(11):1610-1612. PubMed ID: 33079985
    [TBL] [Abstract][Full Text] [Related]  

  • 10. VCFtoTree: a user-friendly tool to construct locus-specific alignments and phylogenies from thousands of anthropologically relevant genome sequences.
    Xu D; Jaber Y; Pavlidis P; Gokcumen O
    BMC Bioinformatics; 2017 Sep; 18(1):426. PubMed ID: 28950836
    [TBL] [Abstract][Full Text] [Related]  

  • 11. BEDTools: a flexible suite of utilities for comparing genomic features.
    Quinlan AR; Hall IM
    Bioinformatics; 2010 Mar; 26(6):841-2. PubMed ID: 20110278
    [TBL] [Abstract][Full Text] [Related]  

  • 12. NX4: a web-based visualization of large multiple sequence alignments.
    Solano-Roman A; Cruz-Castillo C; Offenhuber D; Colubri A
    Bioinformatics; 2019 Nov; 35(22):4800-4802. PubMed ID: 31161215
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The qBED track: a novel genome browser visualization for point processes.
    Moudgil A; Li D; Hsu S; Purushotham D; Wang T; Mitra RD
    Bioinformatics; 2021 May; 37(8):1168-1170. PubMed ID: 32941613
    [TBL] [Abstract][Full Text] [Related]  

  • 14. CESAR 2.0 substantially improves speed and accuracy of comparative gene annotation.
    Sharma V; Schwede P; Hiller M
    Bioinformatics; 2017 Dec; 33(24):3985-3987. PubMed ID: 28961744
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ODGI: understanding pangenome graphs.
    Guarracino A; Heumos S; Nahnsen S; Prins P; Garrison E
    Bioinformatics; 2022 Jun; 38(13):3319-3326. PubMed ID: 35552372
    [TBL] [Abstract][Full Text] [Related]  

  • 16. hictk: blazing fast toolkit to work with .hic and .cool files.
    Rossini R; Paulsen J
    Bioinformatics; 2024 Jul; 40(7):. PubMed ID: 38913844
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ESPript: analysis of multiple sequence alignments in PostScript.
    Gouet P; Courcelle E; Stuart DI; Métoz F
    Bioinformatics; 1999 Apr; 15(4):305-8. PubMed ID: 10320398
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.
    Hanekamp K; Bohnebeck U; Beszteri B; Valentin K
    Bioinformatics; 2007 Apr; 23(7):793-801. PubMed ID: 17332025
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Pharokka: a fast scalable bacteriophage annotation tool.
    Bouras G; Nepal R; Houtak G; Psaltis AJ; Wormald PJ; Vreugde S
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36453861
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SCORPIO: a utility for defining and classifying mutation constellations of virus genomes.
    Colquhoun R; Jackson B; O'Toole Á; Rambaut A
    Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37713452
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.