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4. Secondary structure-based profiles: use of structure-conserving scoring tables in searching protein sequence databases for structural similarities. Lüthy R; McLachlan AD; Eisenberg D Proteins; 1991; 10(3):229-39. PubMed ID: 1881879 [TBL] [Abstract][Full Text] [Related]
5. A multiple sequence alignment algorithm for homologous proteins using secondary structure information and optionally keying alignments to functionally important sites. Henneke CM Comput Appl Biosci; 1989 Apr; 5(2):141-50. PubMed ID: 2751764 [TBL] [Abstract][Full Text] [Related]
6. Alignment of protein sequences using secondary structure: a modified dynamic programming method. Fischel-Ghodsian F; Mathiowitz G; Smith TF Protein Eng; 1990 Jul; 3(7):577-81. PubMed ID: 2217132 [TBL] [Abstract][Full Text] [Related]
7. Improved tools for biological sequence comparison. Pearson WR; Lipman DJ Proc Natl Acad Sci U S A; 1988 Apr; 85(8):2444-8. PubMed ID: 3162770 [TBL] [Abstract][Full Text] [Related]
8. A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisons. Barton GJ; Sternberg MJ J Mol Biol; 1987 Nov; 198(2):327-37. PubMed ID: 3430611 [TBL] [Abstract][Full Text] [Related]
9. Rapid and sensitive sequence comparison with FASTP and FASTA. Pearson WR Methods Enzymol; 1990; 183():63-98. PubMed ID: 2156132 [TBL] [Abstract][Full Text] [Related]
10. Motif recognition and alignment for many sequences by comparison of dot-matrices. Vingron M; Argos P J Mol Biol; 1991 Mar; 218(1):33-43. PubMed ID: 1900535 [TBL] [Abstract][Full Text] [Related]
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14. Database of homology-derived protein structures and the structural meaning of sequence alignment. Sander C; Schneider R Proteins; 1991; 9(1):56-68. PubMed ID: 2017436 [TBL] [Abstract][Full Text] [Related]
15. Hierarchical method to align large numbers of biological sequences. Taylor WR Methods Enzymol; 1990; 183():456-74. PubMed ID: 2156130 [TBL] [Abstract][Full Text] [Related]
16. Improving the sensitivity of the sequence profile method. Lüthy R; Xenarios I; Bucher P Protein Sci; 1994 Jan; 3(1):139-46. PubMed ID: 7511453 [TBL] [Abstract][Full Text] [Related]
17. A non-local gap-penalty for profile alignment. Taylor WR Bull Math Biol; 1996 Jan; 58(1):1-18. PubMed ID: 8819751 [TBL] [Abstract][Full Text] [Related]
18. An algorithm for secondary structure determination in proteins based on sequence similarity. Levin JM; Robson B; Garnier J FEBS Lett; 1986 Sep; 205(2):303-8. PubMed ID: 3743779 [TBL] [Abstract][Full Text] [Related]
19. PairWise and SearchWise: finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames. Birney E; Thompson JD; Gibson TJ Nucleic Acids Res; 1996 Jul; 24(14):2730-9. PubMed ID: 8759004 [TBL] [Abstract][Full Text] [Related]
20. Use of homology domains in sequence similarity detection. Lawrence CB Methods Enzymol; 1990; 183():133-46. PubMed ID: 2314272 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]