These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

168 related articles for article (PubMed ID: 34746856)

  • 1. Computational workflow for functional characterization of COVID-19 through secondary data analysis.
    Ghandikota S; Sharma M; Jegga AG
    STAR Protoc; 2021 Dec; 2(4):100873. PubMed ID: 34746856
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Analysis workflow of publicly available RNA-sequencing datasets.
    Sanchis P; Lavignolle R; Abbate M; Lage-Vickers S; Vazquez E; Cotignola J; Bizzotto J; Gueron G
    STAR Protoc; 2021 Jun; 2(2):100478. PubMed ID: 33907739
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Transcriptome profiling of PBMCs and formalin-fixed autopsy tissues from COVID-19 patients.
    Vuerich M; Wang N; Kalbasi A; Graham JJ; Longhi MS
    STAR Protoc; 2022 Mar; 3(1):101156. PubMed ID: 35141569
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Optimized workflow for single-cell transcriptomics on infectious diseases including COVID-19.
    De Domenico E; Bonaguro L; Schulte-Schrepping J; Becker M; Händler K; Schultze JL
    STAR Protoc; 2020 Dec; 1(3):100233. PubMed ID: 33377120
    [TBL] [Abstract][Full Text] [Related]  

  • 5. An optimized, amplicon-based approach for sequencing of SARS-CoV-2 from patient samples using COVIDSeq assay on Illumina MiSeq sequencing platforms.
    Bhoyar RC; Senthivel V; Jolly B; Imran M; Jain A; Divakar MK; Scaria V; Sivasubbu S
    STAR Protoc; 2021 Sep; 2(3):100755. PubMed ID: 34368787
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Protocol to decode the role of transcriptionally active microbes in SARS-CoV-2-positive patients using an RNA-seq-based approach.
    Yadav A; Devi P; Kumari P; Maurya R; Shamim U; Pandey R
    STAR Protoc; 2024 Jun; 5(2):103071. PubMed ID: 38768029
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Computational workflow for integrative analyses of DNA replication timing, epigenomic, and transcriptomic data.
    Ji F; Van Rechem C; Whetstine JR; Sadreyev RI
    STAR Protoc; 2022 Dec; 3(4):101827. PubMed ID: 36386876
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Analyzing single cell transcriptome data from severe COVID-19 patients.
    Nassir N; Tambi R; Bankapur A; Karuvantevida N; Khansaheb HH; Zehra B; Begum G; Hameid RA; Ahmed A; Deesi Z; Alkhajeh A; Uddin KMF; Akter H; Safizadeh Shabestari SA; Gaudet M; Hachim MY; Alsheikh-Ali A; Berdiev BK; Al Heialy S; Uddin M
    STAR Protoc; 2022 Jun; 3(2):101379. PubMed ID: 35582459
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Secondary analysis of transcriptomes of SARS-CoV-2 infection models to characterize COVID-19.
    Ghandikota S; Sharma M; Jegga AG
    Patterns (N Y); 2021 May; 2(5):100247. PubMed ID: 33842903
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Processing single-cell RNA-seq datasets using SingCellaR.
    Wang G; Wen WX; Mead AJ; Roy A; Psaila B; Thongjuea S
    STAR Protoc; 2022 Jun; 3(2):101266. PubMed ID: 35391938
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Sample processing and single cell RNA-sequencing of peripheral blood immune cells from COVID-19 patients.
    Yao C; Bora SA; Chen P; Goodridge HS; Gharib SA
    STAR Protoc; 2021 Jun; 2(2):100582. PubMed ID: 34002169
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Next-Generation Sequencing (NGS) in COVID-19: A Tool for SARS-CoV-2 Diagnosis, Monitoring New Strains and Phylodynamic Modeling in Molecular Epidemiology.
    John G; Sahajpal NS; Mondal AK; Ananth S; Williams C; Chaubey A; Rojiani AM; Kolhe R
    Curr Issues Mol Biol; 2021 Jul; 43(2):845-867. PubMed ID: 34449545
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Connecting omics signatures and revealing biological mechanisms with iLINCS.
    Pilarczyk M; Fazel-Najafabadi M; Kouril M; Shamsaei B; Vasiliauskas J; Niu W; Mahi N; Zhang L; Clark NA; Ren Y; White S; Karim R; Xu H; Biesiada J; Bennett MF; Davidson SE; Reichard JF; Roberts K; Stathias V; Koleti A; Vidovic D; Clarke DJB; Schürer SC; Ma'ayan A; Meller J; Medvedovic M
    Nat Commun; 2022 Aug; 13(1):4678. PubMed ID: 35945222
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Protocol to identify biomarkers in patients with post-COVID condition using multi-omics and machine learning analysis of human plasma.
    Khoramjoo M; Srinivasan K; Wang K; Wishart D; Prasad V; Oudit GY
    STAR Protoc; 2024 Jun; 5(2):103041. PubMed ID: 38678567
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protocol for executing and benchmarking eight computational doublet-detection methods in single-cell RNA sequencing data analysis.
    Xi NM; Li JJ
    STAR Protoc; 2021 Sep; 2(3):100699. PubMed ID: 34382023
    [TBL] [Abstract][Full Text] [Related]  

  • 16. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Protocol to identify host-viral protein interactions between coagulation-related proteins and their genetic variants with SARS-CoV-2 proteins.
    Holcomb DD; Jankowska KI; Hernandez N; Laurie K; Kames J; Hamasaki-Katagiri N; Komar AA; DiCuccio M; Kimchi-Sarfaty C
    STAR Protoc; 2022 Sep; 3(3):101648. PubMed ID: 36052345
    [TBL] [Abstract][Full Text] [Related]  

  • 18. InterCellar enables interactive analysis and exploration of cell-cell communication in single-cell transcriptomic data.
    Interlandi M; Kerl K; Dugas M
    Commun Biol; 2022 Jan; 5(1):21. PubMed ID: 35017628
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ACE2 chromogenic immunostaining protocol optimized for formalin-fixed paraffin-embedded human tissue sections.
    Jorgensen M; Joseph P; Posgai AL; Vander Heide RS; Kusmartseva I; Atkinson MA
    STAR Protoc; 2021 Sep; 2(3):100696. PubMed ID: 34308375
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Preparation of mouse pancreatic tumor for single-cell RNA sequencing and analysis of the data.
    Surumbayeva A; Kotliar M; Gabitova-Cornell L; Kartashov A; Peri S; Salomonis N; Barski A; Astsaturov I
    STAR Protoc; 2021 Dec; 2(4):100989. PubMed ID: 34927097
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.