BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

311 related articles for article (PubMed ID: 34751401)

  • 1. ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments.
    Hammal F; de Langen P; Bergon A; Lopez F; Ballester B
    Nucleic Acids Res; 2022 Jan; 50(D1):D316-D325. PubMed ID: 34751401
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments.
    Chèneby J; Ménétrier Z; Mestdagh M; Rosnet T; Douida A; Rhalloussi W; Bergon A; Lopez F; Ballester B
    Nucleic Acids Res; 2020 Jan; 48(D1):D180-D188. PubMed ID: 31665499
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments.
    Chèneby J; Gheorghe M; Artufel M; Mathelier A; Ballester B
    Nucleic Acids Res; 2018 Jan; 46(D1):D267-D275. PubMed ID: 29126285
    [TBL] [Abstract][Full Text] [Related]  

  • 4. JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles.
    Mathelier A; Zhao X; Zhang AW; Parcy F; Worsley-Hunt R; Arenillas DJ; Buchman S; Chen CY; Chou A; Ienasescu H; Lim J; Shyr C; Tan G; Zhou M; Lenhard B; Sandelin A; Wasserman WW
    Nucleic Acids Res; 2014 Jan; 42(Database issue):D142-7. PubMed ID: 24194598
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape.
    Griffon A; Barbier Q; Dalino J; van Helden J; Spicuglia S; Ballester B
    Nucleic Acids Res; 2015 Feb; 43(4):e27. PubMed ID: 25477382
    [TBL] [Abstract][Full Text] [Related]  

  • 6. De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets.
    Niu M; Tabari ES; Su Z
    BMC Genomics; 2014 Dec; 15():1047. PubMed ID: 25442502
    [TBL] [Abstract][Full Text] [Related]  

  • 7. TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes.
    Matys V; Kel-Margoulis OV; Fricke E; Liebich I; Land S; Barre-Dirrie A; Reuter I; Chekmenev D; Krull M; Hornischer K; Voss N; Stegmaier P; Lewicki-Potapov B; Saxel H; Kel AE; Wingender E
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D108-10. PubMed ID: 16381825
    [TBL] [Abstract][Full Text] [Related]  

  • 8. GTRD: an integrated view of transcription regulation.
    Kolmykov S; Yevshin I; Kulyashov M; Sharipov R; Kondrakhin Y; Makeev VJ; Kulakovskiy IV; Kel A; Kolpakov F
    Nucleic Acids Res; 2021 Jan; 49(D1):D104-D111. PubMed ID: 33231677
    [TBL] [Abstract][Full Text] [Related]  

  • 9. TcoFBase: a comprehensive database for decoding the regulatory transcription co-factors in human and mouse.
    Zhang Y; Song C; Zhang Y; Wang Y; Feng C; Chen J; Wei L; Pan Q; Shang D; Zhu Y; Zhu J; Fang S; Zhao J; Yang Y; Zhao X; Xu X; Wang Q; Guo J; Li C
    Nucleic Acids Res; 2022 Jan; 50(D1):D391-D401. PubMed ID: 34718747
    [TBL] [Abstract][Full Text] [Related]  

  • 10. OnTheFly: a database of Drosophila melanogaster transcription factors and their binding sites.
    Shazman S; Lee H; Socol Y; Mann RS; Honig B
    Nucleic Acids Res; 2014 Jan; 42(Database issue):D167-71. PubMed ID: 24271386
    [TBL] [Abstract][Full Text] [Related]  

  • 11. REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila.
    Halfon MS; Gallo SM; Bergman CM
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D594-8. PubMed ID: 18039705
    [TBL] [Abstract][Full Text] [Related]  

  • 12. i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly.
    Imrichová H; Hulselmans G; Atak ZK; Potier D; Aerts S
    Nucleic Acids Res; 2015 Jul; 43(W1):W57-64. PubMed ID: 25925574
    [TBL] [Abstract][Full Text] [Related]  

  • 13. TFBScluster web server for the identification of mammalian composite regulatory elements.
    Donaldson IJ; Göttgens B
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W524-8. PubMed ID: 16845063
    [TBL] [Abstract][Full Text] [Related]  

  • 14. REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila.
    Gallo SM; Gerrard DT; Miner D; Simich M; Des Soye B; Bergman CM; Halfon MS
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D118-23. PubMed ID: 20965965
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GTRD: a database on gene transcription regulation-2019 update.
    Yevshin I; Sharipov R; Kolmykov S; Kondrakhin Y; Kolpakov F
    Nucleic Acids Res; 2019 Jan; 47(D1):D100-D105. PubMed ID: 30445619
    [TBL] [Abstract][Full Text] [Related]  

  • 16. From Gigabyte to Kilobyte: A Bioinformatics Protocol for Mining Large RNA-Seq Transcriptomics Data.
    Li J; Hou J; Sun L; Wilkins JM; Lu Y; Niederhuth CE; Merideth BR; Mawhinney TP; Mossine VV; Greenlief CM; Walker JC; Folk WR; Hannink M; Lubahn DB; Birchler JA; Cheng J
    PLoS One; 2015; 10(4):e0125000. PubMed ID: 25902288
    [TBL] [Abstract][Full Text] [Related]  

  • 17. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces.
    Sebastian A; Contreras-Moreira B
    Bioinformatics; 2014 Jan; 30(2):258-65. PubMed ID: 24234003
    [TBL] [Abstract][Full Text] [Related]  

  • 18. AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    Davuluri RV; Sun H; Palaniswamy SK; Matthews N; Molina C; Kurtz M; Grotewold E
    BMC Bioinformatics; 2003 Jun; 4():25. PubMed ID: 12820902
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Integrative analysis of the zinc finger transcription factor Lame duck in the Drosophila myogenic gene regulatory network.
    Busser BW; Huang D; Rogacki KR; Lane EA; Shokri L; Ni T; Gamble CE; Gisselbrecht SS; Zhu J; Bulyk ML; Ovcharenko I; Michelson AM
    Proc Natl Acad Sci U S A; 2012 Dec; 109(50):20768-73. PubMed ID: 23184988
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MEME-ChIP: motif analysis of large DNA datasets.
    Machanick P; Bailey TL
    Bioinformatics; 2011 Jun; 27(12):1696-7. PubMed ID: 21486936
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.